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RoL_Dexc_1.0

Organism name:
Doryrhamphus excisus (bluestripe pipefish)
Isolate:
RoL2022-K1
Sex:
male
BioSample:
SAMN31865074
BioProject:
PRJNA851781
Submitter:
University of Idaho at Moscow
Date:
2023/06/30
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_030265055.1 (latest)
RefSeq assembly accession:
GCF_030265055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JASTKU01
Assembly method:
Hifiasm v. 0.16.1
Expected final version:
no
Genome coverage:
60.0x
Sequencing technology:
Pacbio HiFi; Phase Genomics Hi-C

IDs: 17235001 [UID] 44195088 [GenBank] 44410978 [RefSeq]

See Genome Information for Doryrhamphus excisus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length519,378,276
Total ungapped length519,378,036
Gaps between scaffolds0
Number of scaffolds57
Scaffold N5021,699,758
Scaffold L5010
Number of contigs69
Contig N5018,835,985
Contig L5011
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)57

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030265135.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM059392.1=NC_080466.10
Chromosome 2CM059393.1=NC_080467.10
Chromosome 3CM059394.1=NC_080468.10
Chromosome 4CM059395.1=NC_080469.10
Chromosome 5CM059396.1=NC_080470.10
Chromosome 6CM059397.1=NC_080471.10
Chromosome 7CM059398.1=NC_080472.10
Chromosome 8CM059399.1=NC_080473.10
Chromosome 9CM059400.1=NC_080474.10
Chromosome 10CM059401.1=NC_080475.10
Chromosome 11CM059402.1=NC_080476.10
Chromosome 12CM059403.1=NC_080477.10
Chromosome 13CM059404.1=NC_080478.10
Chromosome 14CM059405.1=NC_080479.10
Chromosome 15CM059406.1=NC_080480.10
Chromosome 16CM059407.1=NC_080481.10
Chromosome 17CM059408.1=NC_080482.10
Chromosome 18CM059409.1=NC_080483.10
Chromosome 19CM059410.1=NC_080484.10
Chromosome 20CM059411.1=NC_080485.10
Chromosome 21CM059412.1=NC_080486.10
Chromosome 22CM059413.1=NC_080487.10
Chromosome 23CM059414.1=NC_080488.10
unplacedn/an/an/a34

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All519,378,27657519,378,03621,699,758120
Chromosome 144,680,574144,680,57444,680,57400
Chromosome 231,654,132131,654,09231,654,13220
Chromosome 331,149,336131,149,29631,149,33620
Chromosome 427,912,432127,912,39227,912,43220
Chromosome 527,238,265127,238,26527,238,26500
Chromosome 623,975,129123,975,10923,975,12910
Chromosome 723,457,444123,457,42423,457,44410
Chromosome 822,300,828122,300,82822,300,82800
Chromosome 921,938,896121,938,89621,938,89600
Chromosome 1021,699,758121,699,73821,699,75810
Chromosome 1121,451,023121,451,02321,451,02300
Chromosome 1221,240,526121,240,52621,240,52600
Chromosome 1321,018,769121,018,74921,018,76910
Chromosome 1420,768,860120,768,86020,768,86000
Chromosome 1518,917,680118,917,68018,917,68000
Chromosome 1618,835,985118,835,98518,835,98500
Chromosome 1718,716,319118,716,31918,716,31900
Chromosome 1817,950,175117,950,17517,950,17500
Chromosome 1917,241,690117,241,67017,241,69010
Chromosome 2016,832,447116,832,44716,832,44700
Chromosome 2115,358,873115,358,85315,358,87310
Chromosome 2214,517,769114,517,76914,517,76900
Chromosome 2312,986,849112,986,84912,986,84900
unplaced7,534,517347,534,5171,930,65500