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Source database (GenBank or RefSeq) File type

ASM3025357v1

Organism name:

Rhododendron vialii (eudicots)

Isolate:

Sample 1

BioSample:

SAMN35028934

BioProject:

PRJNA971246

Submitter:

Chinese Academy of Sciences (CAS)

Date:

2023/06/12

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030253575.1 (latest)

RefSeq assembly accession:

GCF_030253575.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosomes MT and Pltd

Data displayed for RefSeq version

Assembly method:

hifiasm v. 0.16.1

Expected final version:

yes

Genome coverage:

30x

Sequencing technology:

PacBio Sequel

IDs: 16855921 [UID] 43298118 [GenBank] 44888278 [RefSeq]

See Genome Information for Rhododendron vialii

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030253575.1	≠	GCF_030253575.1	ASM3025357v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Status::Full annotation
Annotation Name::GCF_030253575.1-RS_2023_07
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::10.1
URL Organism::Rhododendron_vialii
Annotation Method::Gnomon; cmsearch; tRNAscan-SE
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	532,733,691
Total ungapped length	532,733,196
Gaps between scaffolds	0
Number of scaffolds	13
Scaffold N50	42,050,137
Scaffold L50	6
Number of contigs	18
Contig N50	35,672,969
Contig L50	7
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	13

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1a	CP127065.1	=	NC_080557.1
Chromosome 2a	CP127066.1	=	NC_080558.1
Chromosome 3a	CP127067.1	=	NC_080559.1
Chromosome 4a	CP127068.1	=	NC_080560.1
Chromosome 5a	CP127069.1	=	NC_080561.1
Chromosome 6a	CP127070.1	=	NC_080562.1
Chromosome 7a	CP127071.1	=	NC_080563.1
Chromosome 8a	CP127072.1	=	NC_080564.1
Chromosome 9a	CP127073.1	=	NC_080565.1
Chromosome 10a	CP127074.1	=	NC_080566.1
Chromosome 11a	CP127075.1	=	NC_080567.1
Chromosome 12a	CP127076.1	=	NC_080568.1
Chromosome 13a	CP127077.1	=	NC_080569.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	532,733,691	13	532,733,196	42,050,137	5
Chromosome 1a	49,061,468	1	49,061,468	49,061,468	0
Chromosome 2a	47,677,579	1	47,677,479	47,677,579	1
Chromosome 3a	36,343,144	1	36,343,144	36,343,144	0
Chromosome 4a	44,228,087	1	44,228,087	44,228,087	0
Chromosome 5a	43,106,196	1	43,106,101	43,106,196	1
Chromosome 6a	43,937,226	1	43,937,126	43,937,226	1
Chromosome 7a	42,050,137	1	42,050,137	42,050,137	0
Chromosome 8a	36,345,595	1	36,345,495	36,345,595	1
Chromosome 9a	40,475,278	1	40,475,178	40,475,278	1
Chromosome 10a	39,676,699	1	39,676,699	39,676,699	0
Chromosome 11a	39,472,952	1	39,472,952	39,472,952	0
Chromosome 12a	35,586,280	1	35,586,280	35,586,280	0
Chromosome 13a	34,773,050	1	34,773,050	34,773,050	0

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ASM3025357v1

See Genome Information for Rhododendron vialii

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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