U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



sHypSab1.hap1

Organism name:
Hypanus sabinus (Atlantic stingray)
Isolate:
sHypSab1
Sex:
male
BioSample:
SAMN32745077
BioProject:
PRJNA924072
Submitter:
Vertebrate Genomes Project
Date:
2023/06/05
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_030144855.1 (latest)
RefSeq assembly accession:
GCF_030144855.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JASKZA01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; yahs v. 1.2a + galaxy1
Expected final version:
no
Genome coverage:
34.2x
Sequencing technology:
PacBio Sequel II HiFi; Arima Hi-C v2

IDs: 16813841 [UID] 43201928 [GenBank] 48221438 [RefSeq]

See Genome Information for Hypanus sabinus

Pathogen Detection Resources

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Chromosomes X1, X2 and Y were found based on coverage data. Chromosome Y was moved from hap2 into hap1 to have sex chromosomes in the same haplotype. Chromosome 32 is likely much larger, made up of many small scaffolds ... that could not be joined manually.  more

Global statistics

Total sequence length4,044,869,043
Total ungapped length4,044,539,443
Gaps between scaffolds0
Number of scaffolds2,989
Scaffold N50112,262,883
Scaffold L5012
Number of contigs4,637
Contig N504,266,932
Contig L50234
Total number of chromosomes and plasmids35
Number of component sequences (WGS or clone)2,989

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030144895.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM057972.1=NC_082706.114
Chromosome 2CM057974.1=NC_082707.10
Chromosome 3CM057976.1=NC_082708.10
Chromosome 4CM057977.1=NC_082709.10
Chromosome 5CM057978.1=NC_082710.14
Chromosome 6CM057979.1=NC_082711.10
Chromosome 7CM057980.1=NC_082712.10
Chromosome 8CM057981.1=NC_082713.10
Chromosome 9CM057982.1=NC_082714.10
Chromosome 10CM057983.1=NC_082715.10
Chromosome 11CM057984.1=NC_082716.10
Chromosome 12CM057985.1=NC_082717.10
Chromosome 13CM057986.1=NC_082718.10
Chromosome 14CM057987.1=NC_082719.10
Chromosome 15CM057988.1=NC_082720.11
Chromosome 16CM057989.1=NC_082721.10
Chromosome 17CM057990.1=NC_082722.10
Chromosome 18CM057991.1=NC_082723.10
Chromosome 19CM057992.1=NC_082724.10
Chromosome 20CM057993.1=NC_082725.10
Chromosome 21CM057994.1=NC_082726.10
Chromosome 22CM057995.1=NC_082727.10
Chromosome 23CM057996.1=NC_082728.10
Chromosome 24CM057997.1=NC_082729.131
Chromosome 25CM057998.1=NC_082730.10
Chromosome 26CM057999.1=NC_082731.10
Chromosome 27CM058000.1=NC_082732.10
Chromosome 28CM058001.1=NC_082733.10
Chromosome 29CM058002.1=NC_082734.10
Chromosome 30CM058003.1=NC_082735.10
Chromosome 31CM058004.1=NC_082736.14
Chromosome 32CM058005.1=NC_082737.10
Chromosome X1CM057973.1=NC_082738.122
Chromosome X2CM057975.1=NC_082739.131
Chromosome YCM058006.1=NC_082740.130
unplacedn/an/an/a2,817

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule4,044,869,0432,9894,044,539,443112,262,8831,6480
Chromosome 1AllAssembled moleculeUnlocalized scaffolds225,524,563214,816,65110,707,91215114225,505,363214,798,45110,706,912214,816,651214,816,651692,17896915000
Chromosome 2Assembled molecule212,297,6391212,283,639212,297,639700
Chromosome 3Assembled molecule195,374,1271195,363,327195,374,127540
Chromosome 4Assembled molecule192,518,7371192,505,337192,518,737670
Chromosome 5AllAssembled moleculeUnlocalized scaffolds189,418,805187,191,5262,227,279514189,403,805187,176,9262,226,879187,191,526187,191,526507,47775732000
Chromosome 6Assembled molecule183,023,9001183,009,500183,023,900720
Chromosome 7Assembled molecule182,407,5511182,388,951182,407,551930
Chromosome 8Assembled molecule174,543,2761174,533,276174,543,276500
Chromosome 9Assembled molecule169,660,5321169,645,332169,660,532760
Chromosome 10Assembled molecule167,937,5461167,923,746167,937,546690
Chromosome 11Assembled molecule114,876,5991114,867,399114,876,599460
Chromosome 12Assembled molecule112,262,8831112,254,683112,262,883410
Chromosome 13Assembled molecule111,917,4661111,911,066111,917,466320
Chromosome 14Assembled molecule109,732,0711109,727,271109,732,071240
Chromosome 15AllAssembled moleculeUnlocalized scaffolds94,405,88193,688,977716,90421194,399,68193,682,777716,90493,688,97793,688,977716,90431310000
Chromosome 16Assembled molecule90,798,501190,792,10190,798,501320
Chromosome 17Assembled molecule85,938,633185,931,03385,938,633380
Chromosome 18Assembled molecule83,660,084183,647,68483,660,084620
Chromosome 19Assembled molecule80,692,826180,688,02680,692,826240
Chromosome 20Assembled molecule73,795,958173,791,35873,795,958230
Chromosome 21Assembled molecule70,261,086170,257,08670,261,086200
Chromosome 22Assembled molecule68,388,869168,385,26968,388,869180
Chromosome 23Assembled molecule65,566,259165,561,05965,566,259260
Chromosome 24AllAssembled moleculeUnlocalized scaffolds62,709,17638,762,12223,947,0543213162,695,77638,750,32223,945,45438,762,12238,762,122833,00067598000
Chromosome 25Assembled molecule53,870,988153,867,18853,870,988190
Chromosome 26Assembled molecule48,887,500148,874,30048,887,500660
Chromosome 27Assembled molecule47,430,385147,427,38547,430,385150
Chromosome 28Assembled molecule46,436,846146,433,84646,436,846150
Chromosome 29Assembled molecule42,863,366142,854,36642,863,366450
Chromosome 30Assembled molecule41,651,412141,649,01241,651,412120
Chromosome 31AllAssembled moleculeUnlocalized scaffolds41,212,68839,758,0121,454,67651441,196,68839,742,2121,454,47639,758,01239,758,012400,61980791000
Chromosome 32Assembled molecule6,257,86916,256,2696,257,86980
Chromosome X1AllAssembled moleculeUnlocalized scaffolds86,845,32469,719,15617,126,1682312286,834,72469,712,95617,121,76869,719,15669,719,156931,047533122000
Chromosome X2AllAssembled moleculeUnlocalized scaffolds69,268,41045,031,44924,236,9613213169,262,41045,028,64924,233,76145,031,44945,031,449853,000301416000
Chromosome YAllAssembled moleculeUnlocalized scaffolds21,625,9391,576,62020,049,3193113021,625,7391,576,62020,049,119861,3591,576,620841,645101000
unplacedAssembled molecule420,805,3482,817420,785,748293,924980