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Source database (GenBank or RefSeq) File type

ASM3005281v1

Organism name:

Hevea brasiliensis (rubber tree)

Isolate:

MT/VB/25A 57/8

BioSample:

SAMN33788361

BioProject:

PRJNA945562

Submitter:

Chinese Academy of Tropical Agricultural Sciences

Date:

2023/05/22

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030052815.1 (latest)

RefSeq assembly accession:

GCF_030052815.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JARPOI01

Assembly method:

Nextdenovo v. 2.5.2

Expected final version:

yes

Genome coverage:

300.0x

Sequencing technology:

Oxford Nanopore; Illumina NovaSeq

IDs: 16641721 [UID] 42806758 [GenBank] 42929028 [RefSeq]

See Genome Information for Hevea brasiliensis

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030052815.1	≠	GCF_030052815.1	ASM3005281v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,876,651,409
Total ungapped length	1,720,475,523
Gaps between scaffolds	0
Number of scaffolds	755
Scaffold N50	101,662,298
Scaffold L50	9
Number of contigs	2,182
Contig N50	3,231,751
Contig L50	147
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	755

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM057502.1	=	NC_079493.1	0
Chromosome 2	CM057503.1	=	NC_079494.1	0
Chromosome 3	CM057504.1	=	NC_079495.1	0
Chromosome 4	CM057505.1	=	NC_079496.1	0
Chromosome 5	CM057506.1	=	NC_079497.1	0
Chromosome 6	CM057507.1	=	NC_079498.1	0
Chromosome 7	CM057508.1	=	NC_079499.1	0
Chromosome 8	CM057509.1	=	NC_079500.1	0
Chromosome 9	CM057510.1	=	NC_079501.1	0
Chromosome 10	CM057511.1	=	NC_079502.1	0
Chromosome 11	CM057512.1	=	NC_079503.1	0
Chromosome 12	CM057513.1	=	NC_079504.1	0
Chromosome 13	CM057514.1	=	NC_079505.1	0
Chromosome 14	CM057515.1	=	NC_079506.1	0
Chromosome 15	CM057516.1	=	NC_079507.1	0
Chromosome 16	CM057517.1	=	NC_079508.1	0
Chromosome 17	CM057518.1	=	NC_079509.1	0
Chromosome 18	CM057519.1	=	NC_079510.1	0
unplaced	n/a	n/a	n/a	736

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,876,490,218	754	1,720,314,332	101,662,298	1,427
Chromosome 1	128,648,466	1	110,004,340	128,648,466	131
Chromosome 2	125,487,288	1	119,554,345	125,487,288	65
Chromosome 3	118,397,776	1	95,431,984	118,397,776	119
Chromosome 4	116,662,056	1	115,560,897	116,662,056	44
Chromosome 5	116,300,341	1	115,856,222	116,300,341	41
Chromosome 6	109,140,888	1	86,883,029	109,140,888	105
Chromosome 7	105,774,500	1	104,463,525	105,774,500	47
Chromosome 8	102,000,832	1	100,104,091	102,000,832	49
Chromosome 9	101,662,298	1	97,315,582	101,662,298	42
Chromosome 10	100,867,429	1	99,650,754	100,867,429	82
Chromosome 11	99,514,359	1	90,823,093	99,514,359	66
Chromosome 12	99,447,968	1	72,766,395	99,447,968	173
Chromosome 13	91,651,135	1	72,268,557	91,651,135	166
Chromosome 14	91,662,903	1	87,477,220	91,662,903	71
Chromosome 15	77,018,324	1	76,108,529	77,018,324	39
Chromosome 16	72,357,948	1	70,745,181	72,357,948	43
Chromosome 17	59,093,531	1	57,523,812	59,093,531	53
Chromosome 18	52,736,605	1	51,450,898	52,736,605	35
unplaced	108,065,571	736	96,325,878	192,898	56

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ASM3005281v1

See Genome Information for Hevea brasiliensis

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear