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Source database (GenBank or RefSeq) File type

rRhiFlo1.hap2

Organism name:

Rhineura floridana (Florida worm lizard)

Isolate:

rRhiFlo1

Sex:

female

BioSample:

SAMN34105704

BioProject:

PRJNA953090

Submitter:

Vertebrate Genomes Project

Date:

2023/05/22

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030035675.1 (latest)

RefSeq assembly accession:

GCF_030035675.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JASFZN01

Assembly method:

Hifiasm + Hi-C phasing v. 0.18.5 + galaxy1; Bionano Solve v. 3.7; yahs v. 1.2a.2 + galaxy0

Expected final version:

Genome coverage:

38.35x

Sequencing technology:

PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2

IDs: 16642401 [UID] 42810668 [GenBank] 51122208 [RefSeq]

See Genome Information for Rhineura floridana

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030035675.1	≠	GCF_030035675.1	rRhiFlo1.hap2	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,307,419,594
Total ungapped length	2,300,953,310
Gaps between scaffolds	0
Number of scaffolds	76
Scaffold N50	188,683,971
Scaffold L50	5
Number of contigs	318
Contig N50	18,156,940
Contig L50	38
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	76

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM057605.1	=	NC_084480.1	0
Chromosome 2	CM057606.1	=	NC_084481.1	0
Chromosome 3	CM057607.1	=	NC_084482.1	0
Chromosome 4	CM057608.1	=	NC_084483.1	0
Chromosome 5	CM057609.1	=	NC_084484.1	0
Chromosome 6	CM057610.1	=	NC_084485.1	0
Chromosome 7	CM057611.1	=	NC_084486.1	0
Chromosome 8	CM057612.1	=	NC_084487.1	0
Chromosome 9	CM057613.1	=	NC_084488.1	0
Chromosome 10	CM057614.1	=	NC_084489.1	0
Chromosome 11	CM057615.1	=	NC_084490.1	0
Chromosome 12	CM057616.1	=	NC_084491.1	0
Chromosome 13	CM057617.1	=	NC_084492.1	0
Chromosome 14	CM057618.1	=	NC_084493.1	0
Chromosome 15	CM057619.1	=	NC_084494.1	0
Chromosome 16	CM057620.1	=	NC_084495.1	0
Chromosome 17	CM057621.1	=	NC_084496.1	0
Chromosome 18	CM057622.1	=	NC_084497.1	0
Chromosome 19	CM057623.1	=	NC_084498.1	0
Chromosome 20	CM057624.1	=	NC_084499.1	0
Chromosome 21	CM057625.1	=	NC_084500.1	0
Chromosome 22	CM057626.1	=	NC_084501.1	0
unplaced	n/a	n/a	n/a	54

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,307,419,594	76	2,300,953,310	188,683,971	242
Chromosome 1	323,582,766	1	323,026,802	323,582,766	33
Chromosome 2	240,317,760	1	239,985,914	240,317,760	23
Chromosome 3	232,427,479	1	232,150,326	232,427,479	20
Chromosome 4	211,903,021	1	211,301,359	211,903,021	23
Chromosome 5	188,683,971	1	187,869,410	188,683,971	16
Chromosome 6	158,443,526	1	156,907,686	158,443,526	13
Chromosome 7	155,512,958	1	154,626,056	155,512,958	21
Chromosome 8	136,227,758	1	136,175,166	136,227,758	12
Chromosome 9	128,003,960	1	127,654,528	128,003,960	20
Chromosome 10	91,898,290	1	91,875,536	91,898,290	6
Chromosome 11	74,294,804	1	74,038,994	74,294,804	10
Chromosome 12	46,265,832	1	46,177,284	46,265,832	7
Chromosome 13	41,388,625	1	41,382,278	41,388,625	2
Chromosome 14	40,367,118	1	40,216,948	40,367,118	9
Chromosome 15	39,514,243	1	39,475,104	39,514,243	4
Chromosome 16	39,395,142	1	39,346,868	39,395,142	3
Chromosome 17	31,709,007	1	31,632,666	31,709,007	5
Chromosome 18	30,810,501	1	30,756,752	30,810,501	3
Chromosome 19	28,779,071	1	28,761,158	28,779,071	2
Chromosome 20	22,298,196	1	22,220,475	22,298,196	4
Chromosome 21	20,693,089	1	20,671,968	20,693,089	2
Chromosome 22	20,559,249	1	20,374,071	20,559,249	3
unplaced	4,343,228	54	4,325,961	158,664	1

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rRhiFlo1.hap2

See Genome Information for Rhineura floridana

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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