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Source database (GenBank or RefSeq) File type

HZAU_Pvac_v1

Organism name:

Tachysurus vachellii (bony fishes)

Isolate:

PV-2020

Sex:

female

BioSample:

SAMN33769291

BioProject:

PRJNA819563

Submitter:

Huazhong Agricultural University

Date:

2023/05/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030014155.1 (latest)

RefSeq assembly accession:

GCF_030014155.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JASFAQ01

Assembly method:

Flye v. 2.9

Expected final version:

yes

Genome coverage:

60.0x

Sequencing technology:

PacBio Sequel

IDs: 16599131 [UID] 42702928 [GenBank] 49560408 [RefSeq]

See Genome Information for Tachysurus vachellii

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030014155.1	≠	GCF_030014155.1	HZAU_Pvac_v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	692,121,426
Total ungapped length	691,975,926
Gaps between scaffolds	0
Number of scaffolds	78
Scaffold N50	27,553,930
Scaffold L50	11
Number of contigs	369
Contig N50	13,298,322
Contig L50	21
Total number of chromosomes and plasmids	27
Number of component sequences (WGS or clone)	78

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM057311.1	=	NC_083460.1	0
Chromosome 2	CM057312.1	=	NC_083461.1	0
Chromosome 3	CM057313.1	=	NC_083462.1	0
Chromosome 4	CM057314.1	=	NC_083463.1	0
Chromosome 5	CM057315.1	=	NC_083464.1	0
Chromosome 6	CM057316.1	=	NC_083465.1	0
Chromosome 7	CM057317.1	=	NC_083466.1	0
Chromosome 8	CM057318.1	=	NC_083467.1	0
Chromosome 9	CM057319.1	=	NC_083468.1	0
Chromosome 10	CM057320.1	=	NC_083469.1	0
Chromosome 11	CM057321.1	=	NC_083470.1	0
Chromosome 12	CM057322.1	=	NC_083471.1	0
Chromosome 13	CM057323.1	=	NC_083472.1	0
Chromosome 14	CM057324.1	=	NC_083473.1	0
Chromosome 15	CM057325.1	=	NC_083474.1	0
Chromosome 16	CM057326.1	=	NC_083475.1	0
Chromosome 17	CM057327.1	=	NC_083476.1	0
Chromosome 18	CM057328.1	=	NC_083477.1	0
Chromosome 19	CM057329.1	=	NC_083478.1	0
Chromosome 20	CM057330.1	=	NC_083479.1	0
Chromosome 21	CM057331.1	=	NC_083480.1	0
Chromosome 22	CM057332.1	=	NC_083481.1	0
Chromosome 23	CM057333.1	=	NC_083482.1	0
Chromosome 24	CM057334.1	=	NC_083483.1	0
Chromosome 25	CM057335.1	=	NC_083484.1	0
Chromosome 26	CM057336.1	=	NC_083485.1	0
unplaced	n/a	n/a	n/a	51

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	692,104,899	77	691,959,399	27,553,930	291
Chromosome 1	43,657,716	1	43,651,216	43,657,716	13
Chromosome 2	40,896,051	1	40,889,051	40,896,051	14
Chromosome 3	36,888,217	1	36,874,717	36,888,217	27
Chromosome 4	33,276,060	1	33,273,560	33,276,060	5
Chromosome 5	32,707,000	1	32,704,000	32,707,000	6
Chromosome 6	32,597,123	1	32,589,123	32,597,123	16
Chromosome 7	31,818,857	1	31,797,857	31,818,857	42
Chromosome 8	30,665,500	1	30,659,000	30,665,500	13
Chromosome 9	28,731,355	1	28,728,355	28,731,355	6
Chromosome 10	28,256,991	1	28,249,491	28,256,991	15
Chromosome 11	27,553,930	1	27,551,930	27,553,930	4
Chromosome 12	27,443,794	1	27,433,294	27,443,794	21
Chromosome 13	26,028,991	1	26,028,491	26,028,991	1
Chromosome 14	24,604,000	1	24,600,000	24,604,000	8
Chromosome 15	24,378,500	1	24,375,000	24,378,500	7
Chromosome 16	23,162,500	1	23,145,000	23,162,500	35
Chromosome 17	22,852,063	1	22,851,063	22,852,063	2
Chromosome 18	22,476,563	1	22,473,063	22,476,563	7
Chromosome 19	22,294,437	1	22,292,937	22,294,437	3
Chromosome 20	22,045,500	1	22,044,000	22,045,500	3
Chromosome 21	19,572,866	1	19,563,866	19,572,866	18
Chromosome 22	19,205,148	1	19,204,648	19,205,148	1
Chromosome 23	18,096,000	1	18,092,000	18,096,000	8
Chromosome 24	17,657,601	1	17,655,101	17,657,601	5
Chromosome 25	17,528,722	1	17,528,222	17,528,722	1
Chromosome 26	17,005,764	1	17,000,764	17,005,764	10
unplaced	703,650	51	703,650	23,000	0

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HZAU_Pvac_v1

See Genome Information for Tachysurus vachellii

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear