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aPseCor3.hap2

Organism name:
Pseudophryne corroboree (corroboree frog)
Isolate:
aPseCor3
Sex:
male
BioSample:
SAMN32631236
BioProject:
PRJNA921726
Submitter:
Vertebrate Genomes Project
Date:
2023/02/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028390025.1 (latest)
RefSeq assembly accession:
GCF_028390025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQOLT01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7.0 + galaxy0; yahs v. 1.2a + galaxy1
Expected final version:
no
Genome coverage:
26.91x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2

IDs: 15818801 [UID] 40617148 [GenBank] 54316608 [RefSeq]

See Genome Information for Pseudophryne corroboree

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The aPseCor3.alt.Hap2.FalseDups.cur.20221217.fasta file contains false haplotype duplications removed from the haplotype 2 assembly

Global statistics

Total sequence length8,872,758,793
Total ungapped length8,851,546,336
Gaps between scaffolds0
Number of scaffolds3,127
Scaffold N50846,894,890
Scaffold L505
Number of contigs5,826
Contig N506,819,095
Contig L50353
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)3,127

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_028390045.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM051801.1=NC_086444.16
Chromosome 2CM051802.1=NC_086445.15
Chromosome 3CM051803.1=NC_086446.1103
Chromosome 4CM051804.1=NC_086447.12
Chromosome 5CM051805.1=NC_086448.14
Chromosome 6CM051806.1=NC_086449.16
Chromosome 7CM051807.1=NC_086450.111
Chromosome 8CM051808.1=NC_086451.17
Chromosome 9CM051809.1=NC_086452.11
Chromosome 10CM051810.1=NC_086453.15
Chromosome 11CM051811.1=NC_086454.18
Chromosome 12CM051812.1=NC_086455.13
unplacedn/an/an/a2,954

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule8,872,758,7933,1278,851,546,336846,894,8902,6990
Chromosome 1AllAssembled moleculeUnlocalized scaffolds1,259,687,9791,251,518,3898,169,5907161,256,842,4681,248,673,0788,169,3901,251,518,3891,251,518,3891,873,4263613601000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds1,060,736,3401,055,985,1484,751,1926151,058,285,8301,053,535,8384,749,9921,055,985,1481,055,985,148977,1793052996000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds953,232,807808,540,379144,692,4281041103950,380,603806,162,096144,218,507808,540,379808,540,3792,078,20428724542000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds948,061,938947,253,395808,543312946,297,088945,488,545808,543947,253,395947,253,395453,0002272270000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds854,736,264852,354,0062,382,258514852,773,193850,391,3352,381,858852,354,006852,354,006653,6802352332000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds854,263,070846,894,8907,368,180716852,218,921844,851,5417,367,380846,894,890846,894,8901,816,1942242204000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds529,741,664518,984,06510,757,59912111528,797,631518,040,04510,757,586518,984,065518,984,0651,051,3851981971000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds498,565,963493,017,2565,548,707817497,423,580491,875,4735,548,107493,017,256493,017,256871,0002272243000
Chromosome 9AllAssembled moleculeUnlocalized scaffolds484,493,778483,890,470603,308211482,862,900482,259,592603,308483,890,470483,890,470603,3081791790000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds392,854,241387,424,3705,429,871615392,153,222386,723,3515,429,871387,424,370387,424,3701,424,0731641640000
Chromosome 11AllAssembled moleculeUnlocalized scaffolds374,523,604366,571,8887,951,716918372,906,892364,955,3767,951,516366,571,888366,571,8881,045,9311611601000
Chromosome 12AllAssembled moleculeUnlocalized scaffolds181,093,093177,840,1933,252,900413180,952,981177,700,0943,252,887177,840,193177,840,1931,186,35675741000
unplacedAssembled molecule480,768,0522,954479,651,027282,046560