bMelGeo1.pri

Organism name:: Melospiza georgiana (birds)
Isolate:: bMelGeo1
Sex:: female
BioSample:: SAMN22787412
BioProject:: PRJNA915609
Submitter:: Vertebrate Genomes Project
Date:: 2023/01/31
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_028018845.1 (latest)
RefSeq assembly accession:: GCF_028018845.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAQMCQ01
Assembly method:: HiFiasm v. 0.15.4 + galaxy0; purge_dups v. 1.2.5 + galaxy3; Bionano Solve v. 3.6.1 + galaxy2; salsa v. 2.3 + galaxy2
Expected final version:: no
Genome coverage:: 31.58x
Sequencing technology:: PacBio Sequel II HiFi

IDs: 15728821 [UID] 40362508 [GenBank] 44368148 [RefSeq]

See Genome Information for Melospiza georgiana

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_028018845.1	=	GCF_028018845.1	bMelGeo1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,162,015,399
Total ungapped length	1,160,782,308
Gaps between scaffolds	0
Number of scaffolds	40
Scaffold N50	74,254,230
Scaffold L50	6
Number of contigs	276
Contig N50	10,446,106
Contig L50	36
Total number of chromosomes and plasmids	36
Number of component sequences (WGS or clone)	40

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM051563.1	=	NC_080430.1	0
Chromosome 2	CM051564.1	=	NC_080431.1	0
Chromosome 3	CM051565.1	=	NC_080432.1	0
Chromosome 4	CM051566.1	=	NC_080433.1	0
Chromosome 5	CM051567.1	=	NC_080434.1	0
Chromosome 6	CM051568.1	=	NC_080435.1	0
Chromosome 7	CM051569.1	=	NC_080436.1	0
Chromosome 8	CM051570.1	=	NC_080437.1	0
Chromosome 9	CM051571.1	=	NC_080438.1	0
Chromosome 10	CM051572.1	=	NC_080439.1	0
Chromosome 11	CM051573.1	=	NC_080440.1	0
Chromosome 12	CM051574.1	=	NC_080441.1	0
Chromosome 13	CM051575.1	=	NC_080442.1	0
Chromosome 14	CM051576.1	=	NC_080443.1	0
Chromosome 15	CM051577.1	=	NC_080444.1	0
Chromosome 16	CM051578.1	=	NC_080445.1	0
Chromosome 17	CM051579.1	=	NC_080446.1	0
Chromosome 18	CM051580.1	=	NC_080447.1	0
Chromosome 19	CM051581.1	=	NC_080448.1	0
Chromosome 20	CM051582.1	=	NC_080449.1	0
Chromosome 21	CM051583.1	=	NC_080450.1	0
Chromosome 22	CM051584.1	=	NC_080451.1	0
Chromosome 23	CM051585.1	=	NC_080452.1	0
Chromosome 24	CM051586.1	=	NC_080453.1	0
Chromosome 25	CM051587.1	=	NC_080454.1	0
Chromosome 26	CM051588.1	=	NC_080455.1	0
Chromosome 27	CM051589.1	=	NC_080456.1	0
Chromosome 28	CM051590.1	=	NC_080457.1	0
Chromosome 29	CM051591.1	=	NC_080458.1	0
Chromosome 30	CM051592.1	=	NC_080459.1	0
Chromosome 31	CM051593.1	=	NC_080460.1	0
Chromosome 32	CM051594.1	=	NC_080461.1	0
Chromosome 33	CM051595.1	=	NC_080462.1	0
Chromosome 34	CM051596.1	=	NC_080463.1	0
Chromosome W	CM051597.1	=	NC_080464.1	0
Chromosome Z	CM051598.1	=	NC_080465.1	0
unplaced	n/a	n/a	n/a	4

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,162,015,399	40	1,160,782,308	74,254,230	236
Chromosome 1	155,044,423	1	154,806,872	155,044,423	26
Chromosome 2	121,038,451	1	120,912,440	121,038,451	29
Chromosome 3	116,058,627	1	115,984,884	116,058,627	23
Chromosome 4	75,532,323	1	75,492,157	75,532,323	17
Chromosome 5	74,254,230	1	74,245,067	74,254,230	12
Chromosome 6	64,434,786	1	64,419,038	64,434,786	9
Chromosome 7	41,113,200	1	41,104,816	41,113,200	6
Chromosome 8	37,718,192	1	37,717,433	37,718,192	7
Chromosome 9	32,012,489	1	32,010,051	32,012,489	6
Chromosome 10	25,975,538	1	25,972,444	25,975,538	6
Chromosome 11	23,937,375	1	23,936,768	23,937,375	4
Chromosome 12	21,246,031	1	21,243,447	21,246,031	2
Chromosome 13	20,908,400	1	20,904,101	20,908,400	3
Chromosome 14	20,828,029	1	20,824,382	20,828,029	2
Chromosome 15	19,163,621	1	19,163,421	19,163,621	1
Chromosome 16	17,259,260	1	17,226,262	17,259,260	2
Chromosome 17	15,772,524	1	15,772,352	15,772,524	2
Chromosome 18	14,594,892	1	14,591,504	14,594,892	3
Chromosome 19	13,647,849	1	13,647,639	13,647,849	1
Chromosome 20	13,139,134	1	13,139,108	13,139,134	2
Chromosome 21	12,685,073	1	12,682,863	12,685,073	2
Chromosome 22	11,415,287	1	11,340,920	11,415,287	2
Chromosome 23	10,664,763	1	10,664,263	10,664,763	1
Chromosome 24	9,760,545	1	9,753,974	9,760,545	3
Chromosome 25	8,390,233	1	8,390,033	8,390,233	1
Chromosome 26	7,681,223	1	7,605,187	7,681,223	4
Chromosome 27	7,148,689	1	7,141,792	7,148,689	4
Chromosome 28	6,818,969	1	6,803,573	6,818,969	2
Chromosome 29	6,746,589	1	6,745,489	6,746,589	4
Chromosome 30	5,829,678	1	5,829,278	5,829,678	2
Chromosome 31	4,651,408	1	4,512,469	4,651,408	3
Chromosome 32	4,540,688	1	4,540,488	4,540,688	1
Chromosome 33	3,521,296	1	3,520,896	3,521,296	2
Chromosome 34	1,086,347	1	1,086,147	1,086,347	1
Chromosome W	34,706,425	1	34,705,825	34,706,425	3
Chromosome Z	83,426,660	1	83,082,773	83,426,660	38
unplaced	19,262,152	4	19,262,152	10,891,332	0

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bMelGeo1.pri

See Genome Information for Melospiza georgiana

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

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