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Afim_UVic_2022

Organism name:
Anoplopoma fimbria (sablefish)
Infraspecific name:
Breed: Golden Eagle Sablefish
Isolate:
UVic2021
BioSample:
SAMN30324849
BioProject:
PRJNA869752
Submitter:
University of Victoria
Date:
2023/02/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027596085.2 (latest)
RefSeq assembly accession:
GCF_027596085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAPDVQ01
Assembly method:
Flye v. 2.9-b1774; Racon v. 1.4.16; Pilon v. 1.22; chromonomer v. 1.10; Juicebox v. 1.11.08
Expected final version:
yes
Genome coverage:
73.0x
Sequencing technology:
Oxford Nanopore MinION; Illumina HiSeq

IDs: 15904841 [UID] 40825788 [GenBank] 41661248 [RefSeq]

See Genome Information for Anoplopoma fimbria

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length653,543,715
Total ungapped length653,471,815
Gaps between scaffolds0
Number of scaffolds7,493
Scaffold N5026,734,982
Scaffold L5012
Number of contigs8,212
Contig N502,569,385
Contig L5060
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)8,212

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027596095.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM053339.1=NC_072449.10
Chromosome 2CM053340.1=NC_072450.10
Chromosome 3CM053341.1=NC_072451.10
Chromosome 4CM053342.1=NC_072452.10
Chromosome 5CM053343.1=NC_072453.10
Chromosome 6CM053344.1=NC_072454.10
Chromosome 7CM053345.1=NC_072455.10
Chromosome 8CM053346.1=NC_072456.10
Chromosome 9CM053347.1=NC_072457.10
Chromosome 10CM053348.1=NC_072458.10
Chromosome 11CM053349.1=NC_072459.10
Chromosome 12CM053350.1=NC_072460.10
Chromosome 13CM053351.1=NC_072461.10
Chromosome 14CM053352.1=NC_072462.10
Chromosome 15CM053353.1=NC_072463.10
Chromosome 16CM053354.1=NC_072464.10
Chromosome 17CM053355.1=NC_072465.10
Chromosome 18CM053356.1=NC_072466.10
Chromosome 19CM053357.1=NC_072467.10
Chromosome 20CM053358.1=NC_072468.10
Chromosome 21CM053359.1=NC_072469.10
Chromosome 22CM053360.1=NC_072470.10
Chromosome 23CM053361.1=NC_072471.10
Chromosome 24CM053362.1=NC_072472.10
unplacedn/an/an/a7,469

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All653,543,7157,493653,471,81526,734,9827190
Chromosome 129,532,478129,529,47829,532,478300
Chromosome 232,991,207132,986,20732,991,207500
Chromosome 327,098,089127,095,48927,098,089260
Chromosome 428,017,337128,012,13728,017,337520
Chromosome 519,274,097119,271,59719,274,097250
Chromosome 626,734,982126,732,88226,734,982210
Chromosome 721,954,650121,951,05021,954,650360
Chromosome 829,207,129129,203,22929,207,129390
Chromosome 930,736,991130,730,69130,736,991630
Chromosome 1024,921,237124,919,43724,921,237180
Chromosome 1123,977,153123,975,35323,977,153180
Chromosome 1227,572,788127,570,68827,572,788210
Chromosome 1329,533,912129,531,11229,533,912280
Chromosome 1423,353,334123,352,13423,353,334120
Chromosome 1525,861,465125,858,86525,861,465260
Chromosome 1626,373,885126,370,68526,373,885320
Chromosome 1731,165,636131,162,73631,165,636290
Chromosome 1823,662,767123,659,26723,662,767350
Chromosome 1929,296,465129,294,66529,296,465180
Chromosome 2028,541,780128,538,78028,541,780300
Chromosome 2122,290,363122,288,16322,290,363220
Chromosome 2213,525,654113,523,35413,525,654230
Chromosome 2320,106,882120,103,08220,106,882380
Chromosome 2425,308,490125,305,79025,308,490270
unplaced32,504,9447,46932,504,94415,31400