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Source database (GenBank or RefSeq) File type

mCynVol1.pri

Organism name:

Cynocephalus volans (Philippine flying lemur)

Isolate:

mCynVol1

Sex:

male

BioSample:

SAMN32206947

BioProject:

PRJNA911844

Submitter:

Vertebrate Genomes Project

Date:

2022/12/28

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_027409185.1 (latest)

RefSeq assembly accession:

GCF_027409185.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAPWCP01

Assembly method:

HiFiasm v. 0.16.1 + galaxy2; purge_dups v. 1.2.5 + galaxy4; salsa v. 2.3 + galaxy2

Expected final version:

Genome coverage:

31.83x

Sequencing technology:

PacBio Sequel II HiFi; Arima Hi-C v2

Linked assembly:

GCA_027409165.1 (alternate pseudohaplotype of diploid)

IDs: 15196021 [UID] 39150438 [GenBank] 51119208 [RefSeq]

See Genome Information for Cynocephalus volans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027409185.1	≠	GCF_027409185.1	mCynVol1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,814,418,120
Total ungapped length	2,814,385,620
Gaps between scaffolds	0
Number of scaffolds	130
Scaffold N50	165,781,880
Scaffold L50	7
Number of contigs	246
Contig N50	69,195,939
Contig L50	12
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	130

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM050027.1	=	NC_084460.1	0
Chromosome 2	CM050028.1	=	NC_084461.1	0
Chromosome 3	CM050029.1	=	NC_084462.1	0
Chromosome 4	CM050030.1	=	NC_084463.1	5
Chromosome 5	CM050031.1	=	NC_084464.1	0
Chromosome 6	CM050032.1	=	NC_084465.1	0
Chromosome 7	CM050033.1	=	NC_084466.1	0
Chromosome 8	CM050034.1	=	NC_084467.1	1
Chromosome 9	CM050035.1	=	NC_084468.1	2
Chromosome 10	CM050036.1	=	NC_084469.1	0
Chromosome 11	CM050037.1	=	NC_084470.1	0
Chromosome 12	CM050038.1	=	NC_084471.1	0
Chromosome 13	CM050039.1	=	NC_084472.1	0
Chromosome 14	CM050040.1	=	NC_084473.1	3
Chromosome 15	CM050041.1	=	NC_084474.1	0
Chromosome 16	CM050042.1	=	NC_084475.1	0
Chromosome 17	CM050043.1	=	NC_084476.1	0
Chromosome 18	CM050044.1	=	NC_084477.1	0
Chromosome X	CM050045.1	=	NC_084478.1	0
Chromosome Y	CM050046.1	=	NC_084479.1	0
unplaced	n/a	n/a	n/a	99

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,814,418,120	130	2,814,385,620	165,781,880	116	0
Chromosome 1	Assembled molecule	304,471,933	1	304,470,933	304,471,933	2	0
Chromosome 2	Assembled molecule	234,982,751	1	234,982,351	234,982,751	2	0
Chromosome 3	Assembled molecule	187,144,869	1	187,142,969	187,144,869	5	0
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	173,809,599169,057,3244,752,275	615	173,806,399169,054,1244,752,275	169,057,324169,057,3241,114,427	13130	000
Chromosome 5	Assembled molecule	167,399,654	1	167,399,054	167,399,654	3	0
Chromosome 6	Assembled molecule	165,781,880	1	165,780,280	165,781,880	5	0
Chromosome 7	Assembled molecule	165,290,415	1	165,289,815	165,290,415	3	0
Chromosome 8	AllAssembled moleculeUnlocalized scaffolds	161,530,066160,786,829743,237	211	161,528,566160,785,329743,237	160,786,829160,786,829743,237	660	000
Chromosome 9	AllAssembled moleculeUnlocalized scaffolds	155,720,907152,846,2362,874,671	312	155,720,907152,846,2362,874,671	152,846,236152,846,2361,472,812	000	000
Chromosome 10	Assembled molecule	133,356,689	1	133,353,789	133,356,689	10	0
Chromosome 11	Assembled molecule	132,767,723	1	132,765,923	132,767,723	6	0
Chromosome 12	Assembled molecule	111,868,234	1	111,867,234	111,868,234	5	0
Chromosome 13	Assembled molecule	111,317,787	1	111,316,287	111,317,787	6	0
Chromosome 14	AllAssembled moleculeUnlocalized scaffolds	106,538,978102,764,3363,774,642	413	106,538,078102,763,4363,774,642	102,764,336102,764,3361,421,541	330	000
Chromosome 15	Assembled molecule	98,152,566	1	98,150,966	98,152,566	5	0
Chromosome 16	Assembled molecule	74,386,810	1	74,385,810	74,386,810	2	0
Chromosome 17	Assembled molecule	52,708,075	1	52,706,475	52,708,075	5	0
Chromosome 18	Assembled molecule	19,827,900	1	19,827,700	19,827,900	1	0
Chromosome X	Assembled molecule	181,063,215	1	181,055,215	181,063,215	28	0
Chromosome Y	Assembled molecule	9,723,162	1	9,721,962	9,723,162	6	0
unplaced	Assembled molecule	66,574,907	99	66,574,907	881,834	0	0

Assembly

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mCynVol1.pri

See Genome Information for Cynocephalus volans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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