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fPanHyp1.pri

Organism name:
Pangasianodon hypophthalmus (striped catfish)
Isolate:
fPanHyp1
BioSample:
SAMN32348883
BioProject:
PRJNA914796
Submitter:
Vertebrate Genomes Project
Date:
2022/12/28
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027358585.1 (latest)
RefSeq assembly accession:
GCF_027358585.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAPZKW01
Assembly method:
HiFiasm v. 0.15.3; purge_dups v. 1.2.3; Bionano Solve v. 3.6.1_11162020; salsa v. 2.2
Expected final version:
no
Genome coverage:
23.9x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2
Linked assembly:
GCA_027382375.1 (alternate pseudohaplotype of diploid)

IDs: 15197961 [UID] 39156448 [GenBank] 39891058 [RefSeq]

See Genome Information for Pangasianodon hypophthalmus

Pathogen Detection Resources

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length764,974,446
Total ungapped length761,094,468
Gaps between scaffolds0
Number of scaffolds58
Scaffold N5026,128,932
Scaffold L5013
Number of contigs294
Contig N5013,007,371
Contig L5022
Total number of chromosomes and plasmids30
Number of component sequences (WGS or clone)58

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027358765.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM050107.1=NC_069710.10
Chromosome 2CM050108.1=NC_069711.10
Chromosome 3CM050109.1=NC_069712.10
Chromosome 4CM050110.1=NC_069713.10
Chromosome 5CM050111.1=NC_069714.10
Chromosome 6CM050112.1=NC_069715.10
Chromosome 7CM050113.1=NC_069716.10
Chromosome 8CM050114.1=NC_069717.10
Chromosome 9CM050115.1=NC_069718.12
Chromosome 10CM050116.1=NC_069719.10
Chromosome 11CM050117.1=NC_069720.10
Chromosome 12CM050118.1=NC_069721.10
Chromosome 13CM050119.1=NC_069722.10
Chromosome 14CM050120.1=NC_069723.10
Chromosome 15CM050121.1=NC_069724.10
Chromosome 16CM050122.1=NC_069725.10
Chromosome 17CM050123.1=NC_069726.10
Chromosome 18CM050124.1=NC_069727.10
Chromosome 19CM050125.1=NC_069728.10
Chromosome 20CM050126.1=NC_069729.10
Chromosome 21CM050127.1=NC_069730.10
Chromosome 22CM050128.1=NC_069731.10
Chromosome 23CM050129.1=NC_069732.10
Chromosome 24CM050130.1=NC_069733.10
Chromosome 25CM050131.1=NC_069734.10
Chromosome 26CM050132.1=NC_069735.10
Chromosome 27CM050133.1=NC_069736.10
Chromosome 28CM050134.1=NC_069737.10
Chromosome 29CM050135.1=NC_069738.10
Chromosome 30CM050136.1=NC_069739.10
unplacedn/an/an/a26

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule764,974,44658761,094,46826,128,9322360
Chromosome 1Assembled molecule36,215,093136,102,44636,215,09360
Chromosome 2Assembled molecule35,884,135135,882,94535,884,13560
Chromosome 3Assembled molecule34,651,177134,554,13334,651,17770
Chromosome 4Assembled molecule33,633,996133,501,42033,633,996120
Chromosome 5Assembled molecule32,689,788132,494,22432,689,78870
Chromosome 6Assembled molecule31,385,910131,338,41831,385,91040
Chromosome 7Assembled molecule30,461,503130,446,07330,461,503140
Chromosome 8Assembled molecule30,566,609130,378,61430,566,60990
Chromosome 9AllAssembled moleculeUnlocalized scaffolds30,572,72930,462,587110,14231230,413,08330,302,941110,14230,462,58730,462,58767,076770000
Chromosome 10Assembled molecule29,687,117129,552,04729,687,117100
Chromosome 11Assembled molecule27,660,928127,623,52327,660,928150
Chromosome 12Assembled molecule26,523,830126,243,72626,523,83060
Chromosome 13Assembled molecule26,090,430125,954,37126,090,43060
Chromosome 14Assembled molecule26,128,932125,997,93626,128,93280
Chromosome 15Assembled molecule25,711,196125,586,11425,711,19630
Chromosome 16Assembled molecule25,658,198125,532,29625,658,19890
Chromosome 17Assembled molecule25,293,430125,267,59625,293,43070
Chromosome 18Assembled molecule21,526,667121,433,32921,526,66760
Chromosome 19Assembled molecule22,358,242122,328,95422,358,242110
Chromosome 20Assembled molecule22,075,107121,888,11022,075,10770
Chromosome 21Assembled molecule21,424,013121,342,60721,424,01390
Chromosome 22Assembled molecule21,074,575120,971,34021,074,57570
Chromosome 23Assembled molecule20,457,907120,374,05720,457,90740
Chromosome 24Assembled molecule20,479,702120,289,22220,479,702110
Chromosome 25Assembled molecule19,906,963119,721,74419,906,96370
Chromosome 26Assembled molecule20,408,546119,985,77520,408,54670
Chromosome 27Assembled molecule19,812,572119,639,49919,812,572100
Chromosome 28Assembled molecule17,227,488117,108,33817,227,48850
Chromosome 29Assembled molecule16,054,918115,958,61616,054,91860
Chromosome 30Assembled molecule12,895,015112,726,18212,895,015100
unplacedAssembled molecule457,73026457,73030,73500