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Source database (GenBank or RefSeq) File type

EL10.2

Organism name:

Beta vulgaris subsp. vulgaris (beet)

Infraspecific name:

Cultivar: EL10

BioSample:

SAMN23167344

BioProject:

PRJNA780534

Submitter:

USDA ARS

Date:

2022/12/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_026745355.1 (latest)

RefSeq assembly accession:

GCF_026745355.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

JAJJWK01

Assembly method:

FALCON v. 0.2.2

Expected final version:

yes

Genome coverage:

50.0x

Sequencing technology:

PacBio RSII

IDs: 14769931 [UID] 38235818 [GenBank] 43203168 [RefSeq]

See Genome Information for Beta vulgaris

Pathogen Detection Resources

There are 235 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_026745355.1	≠	GCF_026745355.1	EL10.2	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	569,269,539
Total ungapped length	535,280,881
Gaps between scaffolds	0
Number of scaffolds	20
Scaffold N50	61,987,056
Scaffold L50	5
Number of contigs	3,100
Contig N50	1,287,207
Contig L50	119
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	20

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM049085.1	=	NC_079202.1	0
Chromosome 2	CM049086.1	=	NC_079203.1	0
Chromosome 3	CM049087.1	=	NC_079204.1	1
Chromosome 4	CM049088.1	=	NC_079205.1	0
Chromosome 5	CM049089.1	=	NC_079206.1	2
Chromosome 6	CM049090.1	=	NC_079207.1	0
Chromosome 7	CM049091.1	=	NC_079208.1	0
Chromosome 8	CM049092.1	=	NC_079209.1	0
Chromosome 9	CM049093.1	=	NC_079210.1	0
unplaced	n/a	n/a	n/a	6

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	BA000009.3	=	NC_002511.2
Chloroplast Pltd	OU343016.1	=	NC_059012.1

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	568,751,015	18	534,762,357	61,987,056	3,080	0
Chromosome 1	Assembled molecule	64,339,656	1	58,874,645	64,339,656	504	0
Chromosome 2	Assembled molecule	56,942,840	1	54,119,190	56,942,840	252	0
Chromosome 3	AllAssembled moleculeUnlocalized scaffolds	57,849,08857,299,960549,128	211	55,413,14654,965,146448,000	57,299,96057,299,960549,128	19718017	000
Chromosome 4	Assembled molecule	66,344,488	1	62,120,603	66,344,488	405	0
Chromosome 5	AllAssembled moleculeUnlocalized scaffolds	69,006,79867,929,5471,077,251	312	65,453,67065,200,694252,976	67,929,54767,929,547995,825	33727562	000
Chromosome 6	Assembled molecule	72,475,159	1	68,377,111	72,475,159	422	0
Chromosome 7	Assembled molecule	61,088,525	1	57,183,195	61,088,525	348	0
Chromosome 8	Assembled molecule	61,987,056	1	59,606,398	61,987,056	244	0
Chromosome 9	Assembled molecule	55,765,948	1	51,697,593	55,765,948	307	0
unplaced	Assembled molecule	2,951,457	6	1,916,806	656,595	64	0

Molecule	Total Length
All	518,524
Mitochondrion MT	368,801
Chloroplast Pltd	149,723

Assembly

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EL10.2

See Genome Information for Beta vulgaris

Pathogen Detection Resources

There are 235 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear