U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



mKogBre1 haplotype 1

Organism name:
Kogia breviceps (pygmy sperm whale)
Isolate:
mKogBre1
Sex:
female
BioSample:
SAMN31719513
BioProject:
PRJNA901930
Submitter:
Vertebrate Genomes Project
Date:
2022/11/27
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_026419965.1 (latest)
RefSeq assembly accession:
GCF_026419965.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAPMIF01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 (r375) + galaxy1; Bionano solve v. 3.7; salsa v. 2.3
Expected final version:
yes
Genome coverage:
23.0x

IDs: 14536981 [UID] 37705208 [GenBank] 46426888 [RefSeq]

See Genome Information for Kogia breviceps

Pathogen Detection Resources

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,555,855,246
Total ungapped length2,551,057,477
Gaps between scaffolds0
Number of scaffolds581
Scaffold N50122,394,096
Scaffold L508
Number of contigs724
Contig N5042,780,423
Contig L5020
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)581

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_026419975.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM048693.1=NC_081310.10
Chromosome 2CM048694.1=NC_081311.10
Chromosome 3CM048695.1=NC_081312.10
Chromosome 4CM048696.1=NC_081313.10
Chromosome 5CM048697.1=NC_081314.10
Chromosome 6CM048698.1=NC_081315.10
Chromosome 7CM048699.1=NC_081316.10
Chromosome 8CM048700.1=NC_081317.10
Chromosome 9CM048701.1=NC_081318.15
Chromosome 10CM048702.1=NC_081319.10
Chromosome 11CM048703.1=NC_081320.10
Chromosome 12CM048704.1=NC_081321.10
Chromosome 13CM048705.1=NC_081322.10
Chromosome 14CM048706.1=NC_081323.10
Chromosome 15CM048707.1=NC_081324.10
Chromosome 16CM048708.1=NC_081325.10
Chromosome 17CM048709.1=NC_081326.10
Chromosome 18CM048710.1=NC_081327.10
Chromosome 19CM048711.1=NC_081328.10
Chromosome 20CM048712.1=NC_081329.116
Chromosome XCM048713.1=NC_081330.10
unplacedn/an/an/a538

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,555,838,8405802,551,041,071122,394,0961430
Chromosome 1Assembled molecule202,422,5071198,036,970202,422,507190
Chromosome 2Assembled molecule201,991,5881201,991,588201,991,58800
Chromosome 3Assembled molecule188,796,8361188,794,397188,796,836120
Chromosome 4Assembled molecule184,934,9221184,932,522184,934,92290
Chromosome 5Assembled molecule149,755,6731149,740,045149,755,67330
Chromosome 6Assembled molecule147,152,2281147,151,415147,152,22850
Chromosome 7Assembled molecule122,394,0961122,388,584122,394,09660
Chromosome 8Assembled molecule119,033,5871119,032,387119,033,58730
Chromosome 9AllAssembled moleculeUnlocalized scaffolds117,857,311116,157,0351,700,276615117,739,260116,038,9841,700,276116,157,035116,157,035361,55320200000
Chromosome 10Assembled molecule107,601,1861107,600,186107,601,18620
Chromosome 11Assembled molecule103,450,8721103,449,672103,450,87260
Chromosome 12Assembled molecule102,707,4901102,702,295102,707,49050
Chromosome 13Assembled molecule91,728,547191,726,84791,728,54740
Chromosome 14Assembled molecule91,107,305191,106,90591,107,30520
Chromosome 15Assembled molecule90,542,343190,540,33090,542,34350
Chromosome 16Assembled molecule79,324,955179,317,78179,324,95550
Chromosome 17Assembled molecule78,202,441178,200,51778,202,44130
Chromosome 18Assembled molecule58,624,353158,624,35358,624,35300
Chromosome 19Assembled molecule58,124,162158,011,12558,124,16260
Chromosome 20AllAssembled moleculeUnlocalized scaffolds50,390,33846,024,0874,366,2511711650,389,32546,023,0874,366,23846,024,08746,024,087409,634651000
Chromosome XAssembled molecule139,403,2961139,272,367139,403,296130
unplacedAssembled molecule70,292,80453870,292,200567,82090
MoleculeTotal
Length
Mitochondrion MT16,406