icDioSubl1.1

Organism name:: Diorhabda sublineata (beetles)
Isolate:: icDioSubl1.1
Sex:: male
BioSample:: SAMN21906101
BioProject:: PRJNA767483
Submitter:: United States Department of Agriculture
Date:: 2022/11/18
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_026230105.1 (latest)
RefSeq assembly accession:: GCF_026230105.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAPHNJ01
Assembly method:: HiFiAdapterFilt v. 2.0.0; HiFiASM v. 0.16.1; YaHS v. 1.1; Juicebox v. 1.11.08
Expected final version:: yes
Genome coverage:: 30x
Sequencing technology:: PacBio Sequel

IDs: 14441251 [UID] 37466308 [GenBank] 42880438 [RefSeq]

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_026230105.1	=	GCF_026230105.1	icDioSubl1.1	Chromosome	Latest GenBank, Latest RefSeq

Total sequence length	456,219,552
Total ungapped length	456,211,152
Gaps between scaffolds	0
Number of scaffolds	310
Scaffold N50	38,450,617
Scaffold L50	6
Number of contigs	394
Contig N50	12,487,216
Contig L50	14
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	310

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM047913.1	=	NC_079474.1	0
Chromosome 2	CM047914.1	=	NC_079475.1	0
Chromosome 3	CM047915.1	=	NC_079476.1	0
Chromosome 4	CM047916.1	=	NC_079477.1	0
Chromosome 5	CM047917.1	=	NC_079478.1	0
Chromosome 6	CM047918.1	=	NC_079479.1	0
Chromosome 7	CM047919.1	=	NC_079480.1	0
Chromosome 8	CM047920.1	=	NC_079481.1	0
Chromosome 9	CM047921.1	=	NC_079482.1	0
Chromosome 10	CM047922.1	=	NC_079483.1	0
Chromosome 11	CM047923.1	=	NC_079484.1	0
Chromosome X	CM047924.1	=	NC_079485.1	0
Chromosome Y	CM047925.1	=	NC_079486.1	0
unplaced	n/a	n/a	n/a	297

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	456,219,552	310	456,211,152	38,450,617	84
Chromosome 1	45,309,255	1	45,308,955	45,309,255	3
Chromosome 2	42,704,822	1	42,704,422	42,704,822	4
Chromosome 3	42,249,370	1	42,249,070	42,249,370	3
Chromosome 4	38,852,251	1	38,851,051	38,852,251	12
Chromosome 5	38,450,617	1	38,450,117	38,450,617	5
Chromosome 6	36,865,825	1	36,864,725	36,865,825	11
Chromosome 7	34,388,702	1	34,388,302	34,388,702	4
Chromosome 8	32,882,218	1	32,881,718	32,882,218	5
Chromosome 9	25,974,581	1	25,974,281	25,974,581	3
Chromosome 10	25,964,534	1	25,963,334	25,964,534	12
Chromosome 11	17,841,866	1	17,841,366	17,841,866	5
Chromosome X	40,809,440	1	40,808,640	40,809,440	8
Chromosome Y	9,123,148	1	9,122,248	9,123,148	9
unplaced	24,802,923	297	24,802,923	195,130	0