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RU_DBia_V1.1

Organism name:
Drosophila biarmipes (flies)
Infraspecific name:
Strain: raj3
Sex:
female
BioSample:
SAMN29718609
BioProject:
PRJNA858076
Submitter:
The Rockefeller University
Date:
2022/09/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_025231255.1 (latest)
RefSeq assembly accession:
GCF_025231255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JANEAA01
Assembly method:
Hifiasm v. 0.16.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio Sequel

IDs: 13813061 [UID] 35948728 [GenBank] 36348638 [RefSeq]

See Genome Information for Drosophila biarmipes

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length193,597,863
Total ungapped length193,597,863
Gaps between scaffolds0
Number of scaffolds51
Scaffold N5026,917,925
Scaffold L504
Number of contigs51
Contig N5026,917,925
Contig L504
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)51

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_025231385.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM046028.1=NC_066611.10
Chromosome 2LCM046023.1=NC_066612.10
Chromosome 3LCM046025.1=NC_066613.10
Chromosome 4CM046027.1=NC_066614.10
Chromosome 2RCM046024.1=NC_066615.10
Chromosome 3RCM046026.1=NC_066616.10
unplacedn/an/an/a45

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All193,597,86351193,597,86326,917,92500
Chromosome X26,917,925126,917,92526,917,92500
Chromosome 2L27,174,974127,174,97427,174,97400
Chromosome 3L28,524,468128,524,46828,524,46800
Chromosome 41,889,22311,889,2231,889,22300
Chromosome 2R23,800,383123,800,38323,800,38300
Chromosome 3R33,520,596133,520,59633,520,59600
unplaced51,770,2944551,770,2944,847,85700