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ASM2450914v1

Organism name:
Vidua macroura (Pin-tailed whydah)
Isolate:
BioBank_ID:100142
Sex:
female
BioSample:
SAMN27279399
BioProject:
PRJNA822827
Submitter:
University of Missouri
Date:
2022/08/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024509145.1 (latest)
RefSeq assembly accession:
GCF_024509145.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAMGYM01
Assembly method:
HiFasm v. SEPT-2021
Expected final version:
no
Genome coverage:
47.6x
Sequencing technology:
PacBio RSII

IDs: 13418631 [UID] 35018188 [GenBank] 41137558 [RefSeq]

See Genome Information for Vidua macroura

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,123,269,635
Total ungapped length1,123,235,835
Gaps between scaffolds78
Number of scaffolds224
Scaffold N5061,801,348
Scaffold L506
Number of contigs484
Contig N507,488,902
Contig L5045
Total number of chromosomes and plasmids42
Number of component sequences (WGS or clone)484

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_024509155.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM044060.1=NC_071571.10
Chromosome 2CM044061.1=NC_071572.10
Chromosome 3CM044062.1=NC_071573.10
Chromosome 4CM044063.1=NC_071574.10
Chromosome 5CM044064.1=NC_071575.10
Chromosome 6CM044065.1=NC_071576.10
Chromosome 7CM044066.1=NC_071577.10
Chromosome 8CM044067.1=NC_071578.10
Chromosome 9CM044068.1=NC_071579.10
Chromosome 10CM044069.1=NC_071580.10
Chromosome 11CM044070.1=NC_071581.10
Chromosome 12CM044071.1=NC_071582.10
Chromosome 13CM044072.1=NC_071583.10
Chromosome 14CM044073.1=NC_071584.10
Chromosome 15CM044074.1=NC_071585.10
Chromosome 16CM044075.1=NC_071586.10
Chromosome 17CM044076.1=NC_071587.10
Chromosome 18CM044077.1=NC_071588.10
Chromosome 19CM044078.1=NC_071589.10
Chromosome 20CM044079.1=NC_071590.10
Chromosome 21CM044080.1=NC_071591.10
Chromosome 22CM044081.1=NC_071592.10
Chromosome 23CM044082.1=NC_071593.10
Chromosome 24CM044083.1=NC_071594.10
Chromosome 25CM044084.1=NC_071595.10
Chromosome 26CM044085.1=NC_071596.10
Chromosome 27CM044086.1=NC_071597.10
Chromosome 28CM044087.1=NC_071598.10
Chromosome 29CM044088.1=NC_071599.10
Chromosome 30CM044089.1=NC_071600.10
Chromosome 31CM044090.1=NC_071601.10
Chromosome 32CM044091.1=NC_071602.10
Chromosome 33CM044092.1=NC_071603.10
Chromosome 34CM044093.1=NC_071604.10
Chromosome 35CM044094.1=NC_071605.10
Chromosome 36CM044095.1=NC_071606.10
Chromosome 37CM044096.1=NC_071607.10
Chromosome 38CM044097.1=NC_071608.10
Chromosome 39CM044098.1=NC_071609.10
Chromosome WCM044099.1=NC_071610.16
Chromosome ZCM044100.1=NC_071611.11
unplacedn/an/an/a97

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,123,252,7612231,123,218,96161,801,34826078
Chromosome 1Assembled molecule154,586,42212154,581,222148,423,8754111
Chromosome 2Assembled molecule117,673,4132117,670,013115,365,500331
Chromosome 3Assembled molecule106,592,0911106,590,091106,592,091200
Chromosome 4Assembled molecule74,353,246974,351,54661,801,34898
Chromosome 5Assembled molecule73,878,450273,877,35072,737,999101
Chromosome 6Assembled molecule63,566,420263,565,62062,331,24771
Chromosome 7Assembled molecule40,987,709440,987,10939,011,21533
Chromosome 8Assembled molecule37,024,807237,024,30735,020,55541
Chromosome 9Assembled molecule33,081,603133,081,00333,081,60360
Chromosome 10Assembled molecule26,783,589126,783,58926,783,58900
Chromosome 11Assembled molecule23,251,282223,250,78220,552,54041
Chromosome 12Assembled molecule22,520,835122,520,23522,520,83560
Chromosome 13Assembled molecule22,345,747322,345,24720,004,30032
Chromosome 14Assembled molecule21,480,077221,479,97716,296,88801
Chromosome 15Assembled molecule19,277,639119,277,43919,277,63920
Chromosome 16Assembled molecule16,932,239116,932,03916,932,23920
Chromosome 17Assembled molecule15,501,176115,501,07615,501,17610
Chromosome 18Assembled molecule15,252,912215,252,71210,114,73511
Chromosome 19Assembled molecule13,938,391213,937,89112,174,80241
Chromosome 20Assembled molecule11,591,116111,591,11611,591,11600
Chromosome 21Assembled molecule11,519,644211,519,34410,869,85721
Chromosome 22Assembled molecule8,879,51718,879,4178,879,51710
Chromosome 23Assembled molecule8,673,54038,673,1406,829,09922
Chromosome 24Assembled molecule8,149,72938,149,4294,830,45612
Chromosome 25Assembled molecule7,916,92657,916,4264,124,87314
Chromosome 26Assembled molecule6,696,22216,695,8226,696,22240
Chromosome 27Assembled molecule6,642,42116,641,5216,642,42190
Chromosome 28Assembled molecule6,321,96416,321,5646,321,96440
Chromosome 29Assembled molecule3,856,53313,855,9333,856,53360
Chromosome 30Assembled molecule3,406,49313,406,4933,406,49300
Chromosome 31Assembled molecule2,172,88212,172,8822,172,88200
Chromosome 32Assembled molecule2,068,69412,068,6942,068,69400
Chromosome 33Assembled molecule1,440,223151,438,823100,200014
Chromosome 34Assembled molecule1,423,51511,423,4151,423,51510
Chromosome 35Assembled molecule1,259,34011,259,3401,259,34000
Chromosome 36Assembled molecule1,243,98611,243,9861,243,98600
Chromosome 37Assembled molecule1,243,46211,243,4621,243,46200
Chromosome 38Assembled molecule1,080,33711,080,3371,080,33700
Chromosome 39Assembled molecule723,7979722,997112,47508
Chromosome WAllAssembled moleculeUnlocalized scaffolds32,229,0087,618,88224,610,12671632,228,5087,618,88224,609,6266,023,0977,618,8826,023,097505000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds83,249,29383,157,80491,4891716183,241,59383,150,10491,48922,731,13822,731,13891,4896262015150
unplacedAssembled molecule12,436,0719712,435,471382,86560
MoleculeTotal
Length
Mitochondrion MT16,874