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CAAS_Psat_ZW6_1.0

Organism name:
Pisum sativum (garden pea)
Infraspecific name:
Cultivar: Zhongwan6
BioSample:
SAMN19348527
BioProject:
PRJNA730094
Submitter:
Institute of Microbiology, Chinese Academy of Sciences
Date:
2022/07/19
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024323335.2 (latest)
RefSeq assembly accession:
GCF_024323335.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosomes MT and Pltd
  • Data displayed for RefSeq version
WGS Project:
JAMSHJ01
Assembly method:
Canu v. 1.8; Pilon v. 1.23; PurgeHaplotigs v. 1.1.1; ARCS v. 1.0.4; LINKS v. 1.8.6; BioNano Solve v. 3.4; Juicer v. 1.5.6; ALLMAPS v. 1.0
Expected final version:
yes
Genome coverage:
85.2x
Sequencing technology:
PacBio Sequel

IDs: 13924941 [UID] 36193838 [GenBank] 36196028 [RefSeq]

See Genome Information for Pisum sativum

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,796,066,963
Total ungapped length3,785,824,465
Gaps between scaffolds0
Number of scaffolds1,566
Scaffold N50523,395,090
Scaffold L504
Number of contigs2,392
Contig N508,969,346
Contig L50119
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)1,566

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024323345.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM044345.1=NC_066579.10
Chromosome 2CM044346.1=NC_066580.10
Chromosome 3CM044347.1=NC_066581.10
Chromosome 4CM044348.1=NC_066582.10
Chromosome 5CM044349.1=NC_066583.10
Chromosome 6CM044350.1=NC_066584.10
Chromosome 7CM044351.1=NC_066585.10
unplacedn/an/an/a1,559

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,796,066,9631,5663,785,824,465523,395,0908260
Chromosome 1463,644,5001462,339,314463,644,5001100
Chromosome 2492,729,0001491,655,334492,729,0001000
Chromosome 3535,674,3731534,815,254535,674,3731230
Chromosome 4501,613,0001499,630,039501,613,0001380
Chromosome 5652,929,9601651,646,273652,929,9601260
Chromosome 6523,395,0901521,938,172523,395,090810
Chromosome 7549,106,0001547,148,347549,106,0001340
unplaced76,975,0401,55976,651,73272,206140