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Source database (GenBank or RefSeq) File type

CGAR_prim_01v2

Organism name:

Clarias gariepinus (North African catfish)

Infraspecific name:

Ecotype: Netherlands

Isolate:

MV-2021

Sex:

male

BioSample:

SAMN27021044

BioProject:

PRJNA818990

Submitter:

Leibniz Institute for Farm Animal Biology (FBN)

Date:

2022/07/13

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_024256425.2 (latest)

RefSeq assembly accession:

GCF_024256425.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAMBPB01

Assembly method:

Hifiasm v. 0.16.1

Expected final version:

yes

Genome coverage:

100.0x

Sequencing technology:

Oxford Nanopore PromethION; PacBio Sequel; Illumina NovaSeq; Illumina HiSeq

IDs: 15505431 [UID] 39893148 [GenBank] 40489498 [RefSeq]

See Genome Information for Clarias gariepinus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_024256425.2	≠	GCF_024256425.1	CGAR_prim_01v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_024256425.1	n/a	n/a	CGAR_prim_01	Chromosome	Replaced GenBank

Comment

This genome assembly is the traditional collapsed haploid assembly of this particular individual organism's genome. The same reads were also separately assembled into two pseudohaplotype assemblies of the diploid genome. All three assemblies have this same BioSample.

Global statistics

Total sequence length	969,620,777
Total ungapped length	969,620,777
Gaps between scaffolds	0
Number of scaffolds	48
Scaffold N50	33,715,535
Scaffold L50	12
Number of contigs	48
Contig N50	33,715,535
Contig L50	12
Total number of chromosomes and plasmids	29
Number of component sequences (WGS or clone)	48

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM044232.1	=	NC_071100.1	0
Chromosome 2	CM044233.1	=	NC_071101.1	0
Chromosome 3	CM044234.1	=	NC_071102.1	0
Chromosome 4	CM044235.1	=	NC_071103.1	0
Chromosome 5	CM044236.1	=	NC_071104.1	0
Chromosome 6	CM044237.1	=	NC_071105.1	0
Chromosome 7	CM044238.1	=	NC_071106.1	0
Chromosome 8	CM044239.1	=	NC_071107.1	0
Chromosome 9	CM044240.1	=	NC_071108.1	0
Chromosome 10	CM044241.1	=	NC_071109.1	0
Chromosome 11	CM044242.1	=	NC_071110.1	0
Chromosome 12	CM044243.1	=	NC_071111.1	0
Chromosome 13	CM044244.1	=	NC_071112.1	0
Chromosome 14	CM044245.1	=	NC_071113.1	0
Chromosome 15	CM044246.1	=	NC_071114.1	0
Chromosome 16	CM044247.1	=	NC_071115.1	0
Chromosome 17	CM044248.1	=	NC_071116.1	0
Chromosome 18	CM044249.1	=	NC_071117.1	0
Chromosome 19	CM044250.1	=	NC_071118.1	0
Chromosome 20	CM044251.1	=	NC_071119.1	0
Chromosome 21	CM044252.1	=	NC_071120.1	0
Chromosome 22	CM044253.1	=	NC_071121.1	0
Chromosome 23	CM044254.1	=	NC_071122.1	0
Chromosome 24	CM044255.1	=	NC_071123.1	0
Chromosome 25	CM044256.1	=	NC_071124.1	0
Chromosome 26	CM044257.1	=	NC_071125.1	0
Chromosome 27	CM044258.1	=	NC_071126.1	0
Chromosome 28	CM044259.1	=	NC_071127.1	0
unplaced	n/a	n/a	n/a	19

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50
All	969,604,269	47	969,604,269	33,715,535
Chromosome 1	52,237,485	1	52,237,485	52,237,485
Chromosome 2	52,228,123	1	52,228,123	52,228,123
Chromosome 3	48,147,763	1	48,147,763	48,147,763
Chromosome 4	43,632,810	1	43,632,810	43,632,810
Chromosome 5	41,276,641	1	41,276,641	41,276,641
Chromosome 6	41,146,859	1	41,146,859	41,146,859
Chromosome 7	40,980,544	1	40,980,544	40,980,544
Chromosome 8	38,527,363	1	38,527,363	38,527,363
Chromosome 9	37,984,889	1	37,984,889	37,984,889
Chromosome 10	35,173,121	1	35,173,121	35,173,121
Chromosome 11	34,464,041	1	34,464,041	34,464,041
Chromosome 12	33,715,535	1	33,715,535	33,715,535
Chromosome 13	33,675,256	1	33,675,256	33,675,256
Chromosome 14	32,602,070	1	32,602,070	32,602,070
Chromosome 15	32,143,731	1	32,143,731	32,143,731
Chromosome 16	31,840,490	1	31,840,490	31,840,490
Chromosome 17	30,626,297	1	30,626,297	30,626,297
Chromosome 18	30,601,865	1	30,601,865	30,601,865
Chromosome 19	30,248,171	1	30,248,171	30,248,171
Chromosome 20	29,824,949	1	29,824,949	29,824,949
Chromosome 21	29,591,905	1	29,591,905	29,591,905
Chromosome 22	29,481,022	1	29,481,022	29,481,022
Chromosome 23	26,592,883	1	26,592,883	26,592,883
Chromosome 24	26,202,038	1	26,202,038	26,202,038
Chromosome 25	25,952,957	1	25,952,957	25,952,957
Chromosome 26	25,461,494	1	25,461,494	25,461,494
Chromosome 27	24,522,578	1	24,522,578	24,522,578
Chromosome 28	21,030,501	1	21,030,501	21,030,501
unplaced	9,690,888	19	9,690,888	905,913

Assembly

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CGAR_prim_01v2

See Genome Information for Clarias gariepinus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear