U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2355853v1

  • Anomalous assembly.
Organism name:
Drosophila nasuta (flies)
Infraspecific name:
Strain: 15112-1781.00
Sex:
female
BioSample:
SAMN12703433
BioProject:
PRJNA736413
Submitter:
University of California Berkeley
Date:
2022/05/31
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_023558535.1 (replaced)
RefSeq assembly accession:
GCF_023558535.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJOLN01
Assembly method:
wtdbg2 v. 2
Expected final version:
yes
Genome coverage:
44x
Sequencing technology:
Oxford Nanopore MinION

IDs: 12899671 [UID] 33685038 [GenBank] 49519048 [RefSeq]

See Genome Information for Drosophila nasuta

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

In December 2023 1 sequence was suppressed because it was found to be a contaminant.

Global statistics

Total sequence length171,781,232
Total ungapped length171,780,782
Gaps between scaffolds0
Number of scaffolds282
Scaffold N5033,885,645
Scaffold L502
Number of contigs291
Contig N5020,479,040
Contig L504
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)282

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023558575.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LCM042372.1=NC_083455.10
Chromosome 2RCM042373.1=NC_083456.10
Chromosome 3CM042374.1=NC_083457.10
Chromosome 4CM042375.1=NC_083458.10
Chromosome XCM042376.1=NC_083459.10
unplacedn/an/an/a277

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All171,781,232282171,780,78233,885,64590
Chromosome 2L28,690,150128,690,10028,690,15010
Chromosome 2R33,885,645133,885,44533,885,64540
Chromosome 355,283,848155,283,74855,283,84820
Chromosome 42,061,81812,061,8182,061,81800
Chromosome X32,961,092132,960,99232,961,09220
unplaced18,898,67927718,898,679217,00300