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Source database (GenBank or RefSeq) File type

rElgMul1.1.pri

Organism name:

Elgaria multicarinata webbii (lizards & snakes)

Infraspecific name:

Ecotype: San Diego

Isolate:

HBS135686

BioSample:

SAMN25872353

BioProject:

PRJNA810483

Submitter:

UCLA

Date:

2024/01/04

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_023053635.2 (latest)

RefSeq assembly accession:

GCF_023053635.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JALIGS02

Assembly method:

HiFiasm v. 0.16.1-r375; SALSA v. 2; purge_dups v. 1.2.6; Rapid Curation v. 2023-07-22

Expected final version:

yes

Genome coverage:

36x

Sequencing technology:

Illumina NovaSeq 6000; PacBio Sequel II; Dovetail OmniC

Linked assembly:

GCA_023053675.2 (alternate pseudohaplotype of diploid)

IDs: 20580491 [UID] 51954548 [GenBank] 53840638 [RefSeq]

See Genome Information for Elgaria multicarinata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023053635.2	≠	GCF_023053635.1	rElgMul1.1.pri	Chromosome	Latest GenBank, Latest RefSeq
GCA_023053635.1	n/a	n/a	rElgMul1.0.p	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	1,790,500,004
Total ungapped length	1,790,487,304
Gaps between scaffolds	0
Number of scaffolds	34
Scaffold N50	121,985,326
Scaffold L50	6
Number of contigs	107
Contig N50	85,762,895
Contig L50	8
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	34

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM068554.1	=	NC_086171.1	0
Chromosome 2	CM068555.1	=	NC_086172.1	0
Chromosome 3	CM068556.1	=	NC_086173.1	0
Chromosome 4	CM068557.1	=	NC_086174.1	0
Chromosome 5	CM068558.1	=	NC_086175.1	0
Chromosome 6	CM068559.1	=	NC_086176.1	0
Chromosome 7	CM068560.1	=	NC_086177.1	0
Chromosome 8	CM068561.1	=	NC_086178.1	0
Chromosome 9	CM068562.1	=	NC_086179.1	0
Chromosome 10	CM068563.1	=	NC_086180.1	0
Chromosome 11	CM068564.1	=	NC_086181.1	0
Chromosome 12	CM068565.1	=	NC_086182.1	0
Chromosome 13	CM068566.1	=	NC_086183.1	0
Chromosome 14	CM068567.1	=	NC_086184.1	0
Chromosome 15	CM068568.1	=	NC_086185.1	0
Chromosome 16	CM068569.1	=	NC_086186.1	0
Chromosome 17	CM068570.1	=	NC_086187.1	0
Chromosome 18	CM068571.1	=	NC_086188.1	0
Chromosome 19	CM068572.1	=	NC_086189.1	0
Chromosome 20	CM068573.1	=	NC_086190.1	0
Chromosome 21	CM068574.1	=	NC_086191.1	0
Chromosome 22	CM068575.1	=	NC_086192.1	0
Chromosome 23	CM068576.1	=	NC_086193.1	0
unplaced	n/a	n/a	n/a	11

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,790,500,004	34	1,790,487,304	121,985,326	73
Chromosome 1	220,126,562	1	220,119,962	220,126,562	36
Chromosome 2	184,275,727	1	184,274,827	184,275,727	5
Chromosome 3	176,344,784	1	176,344,484	176,344,784	2
Chromosome 4	149,102,164	1	149,101,464	149,102,164	4
Chromosome 5	139,842,709	1	139,842,609	139,842,709	1
Chromosome 6	121,985,326	1	121,984,326	121,985,326	5
Chromosome 7	117,240,367	1	117,240,367	117,240,367	0
Chromosome 8	115,540,514	1	115,540,114	115,540,514	2
Chromosome 9	101,845,647	1	101,845,247	101,845,647	3
Chromosome 10	95,872,046	1	95,871,546	95,872,046	4
Chromosome 11	48,844,430	1	48,843,830	48,844,430	3
Chromosome 12	37,736,014	1	37,736,014	37,736,014	0
Chromosome 13	35,915,906	1	35,915,906	35,915,906	0
Chromosome 14	35,280,151	1	35,280,051	35,280,151	1
Chromosome 15	33,443,543	1	33,443,343	33,443,543	1
Chromosome 16	31,682,622	1	31,682,522	31,682,622	1
Chromosome 17	29,849,988	1	29,849,988	29,849,988	0
Chromosome 18	26,240,891	1	26,240,791	26,240,891	1
Chromosome 19	20,778,122	1	20,777,922	20,778,122	1
Chromosome 20	20,219,896	1	20,219,696	20,219,896	1
Chromosome 21	17,086,134	1	17,086,134	17,086,134	0
Chromosome 22	16,978,183	1	16,978,183	16,978,183	0
Chromosome 23	13,854,160	1	13,853,860	13,854,160	2
unplaced	414,118	11	414,118	68,889	0

Assembly

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rElgMul1.1.pri

See Genome Information for Elgaria multicarinata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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