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Source database (GenBank or RefSeq) File type

UM_Priviv_1.0

Organism name:

Prionailurus viverrinus (fishing cat)

Isolate:

Anna

Sex:

female

BioSample:

SAMN26586088

BioProject:

PRJNA815338

Submitter:

University of Missouri

Date:

2022/04/08

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022837055.1 (latest)

RefSeq assembly accession:

GCF_022837055.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JALEAK01

Assembly method:

Hifiasm v. 0.13-r308

Expected final version:

yes

Genome coverage:

30.0x

Sequencing technology:

PacBio Sequel

IDs: 12458421 [UID] 32622228 [GenBank] 32847668 [RefSeq]

See Genome Information for Prionailurus viverrinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022837055.1	≠	GCF_022837055.1	UM_Priviv_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,461,562,329
Total ungapped length	2,461,531,252
Gaps between scaffolds	0
Number of scaffolds	192
Scaffold N50	144,906,162
Scaffold L50	7
Number of contigs	255
Contig N50	68,766,634
Contig L50	12
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	192

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM040862.1	=	NC_062561.1	0
Chromosome A2	CM040868.1	=	NC_062562.1	0
Chromosome A3	CM040874.1	=	NC_062563.1	0
Chromosome B1	CM040863.1	=	NC_062564.1	0
Chromosome B2	CM040869.1	=	NC_062565.1	0
Chromosome B3	CM040875.1	=	NC_062566.1	0
Chromosome B4	CM040878.1	=	NC_062567.1	0
Chromosome C1	CM040864.1	=	NC_062568.1	0
Chromosome C2	CM040870.1	=	NC_062569.1	0
Chromosome D1	CM040865.1	=	NC_062570.1	0
Chromosome D2	CM040871.1	=	NC_062571.1	0
Chromosome D3	CM040876.1	=	NC_062572.1	0
Chromosome D4	CM040879.1	=	NC_062573.1	0
Chromosome E1	CM040866.1	=	NC_062574.1	0
Chromosome E2	CM040872.1	=	NC_062575.1	0
Chromosome E3	CM040877.1	=	NC_062576.1	0
Chromosome F1	CM040867.1	=	NC_062577.1	0
Chromosome F2	CM040873.1	=	NC_062578.1	0
Chromosome X	CM040880.1	=	NC_062579.1	0
unplaced	n/a	n/a	n/a	172

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,461,545,606	191	2,461,514,529	144,906,162	63
Chromosome A1	240,104,960	1	240,103,960	240,104,960	2
Chromosome A2	169,895,392	1	169,892,892	169,895,392	5
Chromosome A3	132,667,760	1	132,666,760	132,667,760	2
Chromosome B1	202,601,910	1	202,600,910	202,601,910	2
Chromosome B2	152,887,518	1	152,886,518	152,887,518	2
Chromosome B3	144,906,162	1	144,905,162	144,906,162	2
Chromosome B4	139,585,731	1	139,581,731	139,585,731	8
Chromosome C1	214,568,800	1	214,567,800	214,568,800	2
Chromosome C2	155,516,939	1	155,516,439	155,516,939	1
Chromosome D1	115,646,109	1	115,643,609	115,646,109	5
Chromosome D2	88,669,378	1	88,668,878	88,669,378	1
Chromosome D3	96,018,806	1	96,017,806	96,018,806	2
Chromosome D4	94,870,271	1	94,868,271	94,870,271	4
Chromosome E1	53,308,791	1	53,305,791	53,308,791	6
Chromosome E2	58,064,119	1	58,063,542	58,064,119	2
Chromosome E3	42,168,429	1	42,167,929	42,168,429	1
Chromosome F1	67,277,416	1	67,276,916	67,277,416	1
Chromosome F2	83,838,756	1	83,838,256	83,838,756	1
Chromosome X	118,992,027	1	118,989,527	118,992,027	5
unplaced	89,956,332	172	89,951,832	3,065,723	9

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UM_Priviv_1.0

See Genome Information for Prionailurus viverrinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear