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Source database (GenBank or RefSeq) File type

ASM2204524v1

Organism name:

Lucilia cuprina (Australian sheep blowfly)

Infraspecific name:

Specimen-voucher: MJS_2017_A

Isolate:

Lc7/37

Sex:

pooled male and female

BioSample:

SAMN23894005

BioProject:

PRJNA787202

Submitter:

North Carolina State University

Date:

2022/02/08

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022045245.1 (latest)

RefSeq assembly accession:

GCF_022045245.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 2 unlocalized scaffolds on chromosome MT

Data displayed for RefSeq version

WGS Project:

JAKMAP01

Assembly method:

Meraculous v. March-2017

Expected final version:

yes

Genome coverage:

212.0x

Sequencing technology:

Illumina

IDs: 12052011 [UID] 31629908 [GenBank] 31969898 [RefSeq]

See Genome Information for Lucilia cuprina

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022045245.1	≠	GCF_022045245.1	ASM2204524v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The Illumina short reads were assembled with Meraculous. Chicago and Hi-C libraries from Dovetail Genomics were used for scaffolding. PacBio CLR were used for gap filling with TGS-GapCloser. The short reads were used to polish the assembly with Pilon.

Global statistics

Total sequence length	409,159,265
Total ungapped length	407,173,953
Gaps between scaffolds	0
Number of scaffolds	8,457
Scaffold N50	71,024,062
Scaffold L50	3
Number of contigs	27,983
Contig N50	65,274
Contig L50	1,498
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	8,457

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome X	CM039062.1	=	NC_060949.1	0
Chromosome 2	CM039057.1	=	NC_060950.1	0
Chromosome 3	CM039058.1	=	NC_060951.1	0
Chromosome 4	CM039059.1	=	NC_060952.1	0
Chromosome 5	CM039060.1	=	NC_060953.1	0
Chromosome 6	CM039061.1	=	NC_060954.1	0
unplaced	n/a	n/a	n/a	8,451

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	409,159,265	8,457	407,173,953	71,024,062	19,526
Chromosome X	16,485,197	1	16,388,620	16,485,197	966
Chromosome 2	71,347,931	1	70,917,931	71,347,931	4,251
Chromosome 3	67,696,999	1	67,392,940	67,696,999	2,987
Chromosome 4	101,762,404	1	101,412,843	101,762,404	3,474
Chromosome 5	71,024,062	1	70,630,318	71,024,062	3,876
Chromosome 6	64,449,796	1	64,053,173	64,449,796	3,879
unplaced	16,392,876	8,451	16,378,128	1,963	93

Assembly

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ASM2204524v1

See Genome Information for Lucilia cuprina

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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