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ULB_Chis1_1.0

Organism name:
Cataglyphis hispanica (ants)
Isolate:
Lineage 1
Sex:
male
BioSample:
SAMN24492125
BioProject:
PRJNA792953
Submitter:
Universite Libre de Bruxelles
Date:
2022/01/19
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_021464435.1 (latest)
RefSeq assembly accession:
GCF_021464435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJUXC01
Assembly method:
Flye v. 2.7; instaGRAAL v. 1; BCFtools v. 1.4
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore MinION

IDs: 11776191 [UID] 31014468 [GenBank] 35637638 [RefSeq]

See Genome Information for Cataglyphis hispanica

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length206,388,925
Total ungapped length206,388,729
Gaps between scaffolds0
Number of scaffolds453
Scaffold N507,954,289
Scaffold L509
Number of contigs455
Contig N507,954,289
Contig L509
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)453

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021464485.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM038490.1=NC_065954.10
Chromosome 2CM038491.1=NC_065955.10
Chromosome 3CM038492.1=NC_065956.10
Chromosome 4CM038493.1=NC_065957.10
Chromosome 5CM038494.1=NC_065958.10
Chromosome 6CM038495.1=NC_065959.10
Chromosome 7CM038496.1=NC_065960.10
Chromosome 8CM038497.1=NC_065961.10
Chromosome 9CM038498.1=NC_065962.10
Chromosome 10CM038499.1=NC_065963.10
Chromosome 11CM038500.1=NC_065964.10
Chromosome 12CM038501.1=NC_065965.10
Chromosome 13CM038502.1=NC_065966.10
Chromosome 14CM038503.1=NC_065967.10
Chromosome 15CM038504.1=NC_065968.10
Chromosome 16CM038505.1=NC_065969.10
Chromosome 17CM038506.1=NC_065970.10
Chromosome 18CM038507.1=NC_065971.10
Chromosome 19CM038508.1=NC_065972.10
Chromosome 20CM038509.1=NC_065973.10
Chromosome 21CM038510.1=NC_065974.10
Chromosome 22CM038511.1=NC_065975.10
Chromosome 23CM038512.1=NC_065976.10
Chromosome 24CM038513.1=NC_065977.10
Chromosome 25CM038514.1=NC_065978.10
Chromosome 26CM038515.1=NC_065979.10
unplacedn/an/an/a427

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All206,388,925453206,388,7297,954,28920
Chromosome 120,438,509120,438,50920,438,50900
Chromosome 215,689,435115,689,43515,689,43500
Chromosome 312,693,346112,693,34612,693,34600
Chromosome 412,390,001112,390,00112,390,00100
Chromosome 512,010,890112,010,89012,010,89000
Chromosome 69,937,98119,937,9819,937,98100
Chromosome 78,824,45418,824,4548,824,45400
Chromosome 88,308,94218,308,9428,308,94200
Chromosome 97,954,28917,954,2897,954,28900
Chromosome 107,938,06917,938,0697,938,06900
Chromosome 117,847,33617,847,3367,847,33600
Chromosome 127,620,91717,620,9177,620,91700
Chromosome 137,256,83117,256,7317,256,83110
Chromosome 147,219,01317,219,0137,219,01300
Chromosome 156,571,91816,571,9186,571,91800
Chromosome 166,273,26816,273,2686,273,26800
Chromosome 175,599,12115,599,1215,599,12100
Chromosome 185,452,54115,452,5415,452,54100
Chromosome 195,349,80915,349,8095,349,80900
Chromosome 205,296,98915,296,9895,296,98900
Chromosome 214,853,56914,853,5694,853,56900
Chromosome 224,700,33614,700,3364,700,33600
Chromosome 234,647,57014,647,5704,647,57000
Chromosome 244,514,32214,514,3224,514,32200
Chromosome 253,262,83113,262,8313,262,83100
Chromosome 262,511,19612,511,1002,511,19610
unplaced1,225,4424271,225,4424,76300