Marmota_monax_Labrador192_F-V1.1

Organism name:: Marmota monax (woodchuck)
Isolate:: L192
Sex:: male
BioSample:: SAMN21332666
BioProject:: PRJNA761405
Submitter:: Hospital for Sick Children
Date:: 2022/08/11
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_021218885.2 (latest)
RefSeq assembly accession:: GCF_021218885.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAIQCD02
Assembly method:: Flye v. 2.8; freebayes v. 1.3.1
Genome coverage:: 77.2
Sequencing technology:: Illumina HiSeq; PacBio Sequel

IDs: 13516521 [UID] 35250688 [GenBank] 45616528 [RefSeq]

See Genome Information for Marmota monax

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021218885.2	=	GCF_021218885.2	Marmota_monax_Labrador192_F-V1.1	Scaffold	Latest GenBank, Latest RefSeq
GCA_021218885.1	≠	GCF_021218885.1	Marmota_monax_Labrador192_V1.0	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

This assembly comprised of only de novo assembled and scaffolded components. An alternative version of this assembly scaffolded with the assistance of reference genomes can be accessed under BioProject number PRJNA826499.

Global statistics

Total sequence length	2,638,791,045
Total ungapped length	2,638,786,345
Gaps between scaffolds	0
Number of scaffolds	3,333
Scaffold N50	11,523,559
Scaffold L50	60
Number of contigs	3,380
Contig N50	10,671,126
Contig L50	66
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	3,380

Assembly

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Marmota_monax_Labrador192_F-V1.1

See Genome Information for Marmota monax

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear