U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



bCorHaw1.pri.cur

Organism name:
Corvus hawaiiensis (hawaiian crow)
Isolate:
bCorHaw1
Sex:
female
BioSample:
SAMN22550278
BioProject:
PRJNA774314
Submitter:
Vertebrate Genomes Project
Date:
2021/11/04
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020740725.1 (latest)
RefSeq assembly accession:
GCF_020740725.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAJGSY01
Assembly method:
HiFiasm v. 0.15.4+galaxy; purge_dups v. 1.2.5+galaxy3; Bionano Solve v. 3.6.1+galaxy2; Salsa v. 2.3+galaxy0; gEVAL manual curation v. 2021-09-20; VGP pipeline v. 2.0
Expected final version:
no
Genome coverage:
29.61x
Sequencing technology:
PacBio Sequel II HiFi; Illumina NovaSeq; Bionano Genomics Saphyr DLS; Arima Genomics Hi-C v2
Linked assembly:
GCA_020740675.1 (alternate pseudohaplotype of diploid)

IDs: 11377821 [UID] 29951838 [GenBank] 33268228 [RefSeq]

See Genome Information for Corvus hawaiiensis

Pathogen Detection Resources

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,151,611,379
Total ungapped length1,149,798,152
Gaps between scaffolds0
Number of scaffolds188
Scaffold N5076,278,832
Scaffold L506
Number of contigs482
Contig N5023,064,755
Contig L5015
Total number of chromosomes and plasmids44
Number of component sequences (WGS or clone)188

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020740745.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM036346.1=NC_063213.10
Chromosome 2CM036347.1=NC_063214.10
Chromosome 3CM036348.1=NC_063215.10
Chromosome 4CM036349.1=NC_063216.10
Chromosome 5CM036350.1=NC_063217.10
Chromosome 6CM036351.1=NC_063218.10
Chromosome 7CM036352.1=NC_063219.10
Chromosome 8CM036353.1=NC_063220.10
Chromosome 9CM036354.1=NC_063221.10
Chromosome 10CM036355.1=NC_063222.10
Chromosome 11CM036356.1=NC_063223.10
Chromosome 12CM036357.1=NC_063224.10
Chromosome 13CM036358.1=NC_063225.10
Chromosome 14CM036359.1=NC_063226.10
Chromosome 15CM036360.1=NC_063227.10
Chromosome 16CM036361.1=NC_063228.10
Chromosome 17CM036362.1=NC_063229.10
Chromosome 18CM036363.1=NC_063230.10
Chromosome 19CM036364.1=NC_063231.10
Chromosome 20CM036365.1=NC_063232.10
Chromosome 21CM036366.1=NC_063233.10
Chromosome 22CM036367.1=NC_063234.10
Chromosome 23CM036368.1=NC_063235.10
Chromosome 24CM036369.1=NC_063236.10
Chromosome 25CM036370.1=NC_063237.10
Chromosome 26CM036371.1=NC_063238.10
Chromosome 27CM036372.1=NC_063239.10
Chromosome 28CM036373.1=NC_063240.10
Chromosome 29CM036374.1=NC_063241.10
Chromosome 30CM036375.1=NC_063242.10
Chromosome 31CM036376.1=NC_063243.13
Chromosome 32CM036377.1=NC_063244.16
Chromosome 33CM036378.1=NC_063245.10
Chromosome 34CM036379.1=NC_063246.17
Chromosome 35CM036380.1=NC_063247.10
Chromosome 36CM036381.1=NC_063248.10
Chromosome 37CM036382.1=NC_063249.16
Chromosome 38CM036383.1=NC_063250.13
Chromosome 39CM036384.1=NC_063251.10
Chromosome 40CM036385.1=NC_063252.10
Chromosome 41CM036386.1=NC_063253.13
Chromosome WCM036387.1=NC_063254.10
Chromosome ZCM036388.1=NC_063255.10
unplacedn/an/an/a116

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,151,594,4811871,149,781,25476,278,8322940
Chromosome 1Assembled molecule99,062,180199,050,74699,062,180240
Chromosome 2Assembled molecule123,451,4051123,442,451123,451,405220
Chromosome 3Assembled molecule121,534,9401121,523,032121,534,940150
Chromosome 4Assembled molecule80,112,800180,105,85780,112,800330
Chromosome 5Assembled molecule76,278,832176,268,03876,278,83280
Chromosome 6Assembled molecule66,143,299166,138,82666,143,29970
Chromosome 7Assembled molecule40,978,052140,977,25240,978,05240
Chromosome 8Assembled molecule38,659,334138,654,82138,659,33490
Chromosome 9Assembled molecule33,574,751133,571,96433,574,751100
Chromosome 10Assembled molecule28,816,175128,807,85628,816,17510
Chromosome 11Assembled molecule23,986,915123,945,07523,986,91520
Chromosome 12Assembled molecule23,235,100123,235,10023,235,10000
Chromosome 13Assembled molecule22,362,767122,361,15422,362,76760
Chromosome 14Assembled molecule23,265,108123,261,89723,265,10880
Chromosome 15Assembled molecule21,088,201121,088,00121,088,20110
Chromosome 16Assembled molecule17,487,702117,482,94717,487,70220
Chromosome 17Assembled molecule16,938,386116,938,38616,938,38600
Chromosome 18Assembled molecule15,572,589115,570,18815,572,58940
Chromosome 19Assembled molecule12,787,533112,787,13312,787,53320
Chromosome 20Assembled molecule13,899,114113,898,71413,899,11420
Chromosome 21Assembled molecule13,093,161113,093,11913,093,16110
Chromosome 22Assembled molecule8,696,97518,695,4758,696,97560
Chromosome 23Assembled molecule7,971,72217,969,2227,971,72280
Chromosome 24Assembled molecule11,344,391111,295,46411,344,391190
Chromosome 25Assembled molecule7,312,78617,312,7867,312,78600
Chromosome 26Assembled molecule46,055,897146,036,05846,055,897120
Chromosome 27Assembled molecule6,387,99916,385,3546,387,99930
Chromosome 28Assembled molecule7,803,72117,796,6567,803,721100
Chromosome 29Assembled molecule3,496,99313,492,5803,496,993140
Chromosome 30Assembled molecule22,021,689122,018,32622,021,68910
Chromosome 31AllAssembled moleculeUnlocalized scaffolds5,501,1394,714,721786,4184135,499,2264,714,708784,5184,714,7214,714,721609,854615000
Chromosome 32AllAssembled moleculeUnlocalized scaffolds1,222,332736,907485,4257161,219,832735,407484,425736,907736,90772,376532000
Chromosome 33Assembled molecule477,0221476,822477,02210
Chromosome 34AllAssembled moleculeUnlocalized scaffolds747,919104,925642,994817745,419104,425640,994104,925104,925100,361514000
Chromosome 35Assembled molecule1,321,80711,321,6071,321,80710
Chromosome 36Assembled molecule1,784,96811,782,3681,784,96870
Chromosome 37AllAssembled moleculeUnlocalized scaffolds771,514336,161435,353716770,514336,161434,353196,259336,16181,550202000
Chromosome 38AllAssembled moleculeUnlocalized scaffolds424,579251,864172,715413423,379251,164172,215251,864251,86491,052321000
Chromosome 39Assembled molecule167,1491167,149167,14900
Chromosome 40Assembled molecule337,8091336,609337,80930
Chromosome 41AllAssembled moleculeUnlocalized scaffolds257,212123,330133,882413256,712122,830133,88250,611123,33044,532110000
Chromosome WAssembled molecule6,742,29016,741,7906,742,29010
Chromosome ZAssembled molecule79,826,082179,617,38079,826,082230
unplacedAssembled molecule18,592,14211617,217,969610,63420
MoleculeTotal
Length
Mitochondrion MT16,898