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BTI_SOV_V1

Organism name:
Spinacia oleracea (spinach)
Infraspecific name:
Cultivar: Varoflay
BioSample:
SAMN13714978
BioProject:
PRJNA598728
Submitter:
Cornell University
Date:
2021/10/20
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020520425.1 (latest)
RefSeq assembly accession:
GCF_020520425.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT and Pltd
  • Data displayed for RefSeq version
WGS Project:
WWFT01
Assembly method:
Canu v. 1.7.1
Expected final version:
yes
Genome coverage:
109.0x
Sequencing technology:
PacBio Sequel

IDs: 11254751 [UID] 29669208 [GenBank] 42882238 [RefSeq]

See Genome Information for Spinacia oleracea

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length894,736,656
Total ungapped length894,730,356
Gaps between scaffolds0
Number of scaffolds246
Scaffold N50151,450,279
Scaffold L503
Number of contigs309
Contig N5023,783,150
Contig L5012
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)246

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020520435.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM035890.1=NC_079487.10
Chromosome 2CM035891.1=NC_079488.10
Chromosome 3CM035892.1=NC_079489.10
Chromosome 4CM035893.1=NC_079490.10
Chromosome 5CM035894.1=NC_079491.10
Chromosome 6CM035895.1=NC_079492.10
unplacedn/an/an/a238

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All894,256,318244894,250,018151,450,279630
Chromosome 1136,525,0041136,524,104136,525,00490
Chromosome 2114,788,6241114,788,124114,788,62450
Chromosome 3160,043,9761160,042,876160,043,976110
Chromosome 4189,052,2561189,050,356189,052,256190
Chromosome 5127,367,8891127,366,889127,367,889100
Chromosome 6151,450,2791151,449,379151,450,27990
unplaced15,028,29023815,028,29099,33100
MoleculeTotal
Length
All480,338
Mitochondrion MT329,613
Chloroplast Pltd150,725