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Source database (GenBank or RefSeq) File type

ASM_NN_V1

Organism name:

Neogale vison (American mink)

Isolate:

M4711

Sex:

female

BioSample:

SAMN19764019

BioProject:

PRJNA741394

Submitter:

Dalhousie University

Date:

2021/09/29

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_020171115.1 (latest)

RefSeq assembly accession:

GCF_020171115.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAIAWX01

Assembly method:

Hifiasm v. 0.15.4; instaGRAAL v. 0.1.6

Expected final version:

yes

Genome coverage:

21.0x

Sequencing technology:

PacBio Sequel; Illumina HiSeq

IDs: 11012011 [UID] 29102078 [GenBank] 29368188 [RefSeq]

See Genome Information for Neogale vison

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020171115.1	≠	GCF_020171115.1	ASM_NN_V1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,681,215,271
Total ungapped length	2,681,215,271
Gaps between scaffolds	0
Number of scaffolds	183
Scaffold N50	220,349,319
Scaffold L50	6
Number of contigs	183
Contig N50	220,349,319
Contig L50	6
Total number of chromosomes and plasmids	16
Number of component sequences (WGS or clone)	183

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM035030.1	=	NC_058091.1	0
Chromosome 2	CM035031.1	=	NC_058092.1	0
Chromosome 3	CM035032.1	=	NC_058093.1	0
Chromosome 4	CM035033.1	=	NC_058094.1	0
Chromosome 5	CM035034.1	=	NC_058095.1	0
Chromosome 6	CM035035.1	=	NC_058096.1	0
Chromosome 7	CM035036.1	=	NC_058097.1	0
Chromosome 8	CM035037.1	=	NC_058098.1	0
Chromosome 9	CM035038.1	=	NC_058099.1	0
Chromosome 10	CM035039.1	=	NC_058100.1	0
Chromosome 11	CM035040.1	=	NC_058101.1	0
Chromosome 12	CM035041.1	=	NC_058102.1	0
Chromosome 13	CM035042.1	=	NC_058103.1	0
Chromosome 14	CM035043.1	=	NC_058104.1	0
Chromosome X	CM035044.1	=	NC_058105.1	0
unplaced	n/a	n/a	n/a	167

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50
All	2,681,198,719	182	2,681,198,719	220,349,319
Chromosome 1	317,036,279	1	317,036,279	317,036,279
Chromosome 2	240,416,976	1	240,416,976	240,416,976
Chromosome 3	235,645,773	1	235,645,773	235,645,773
Chromosome 4	231,359,643	1	231,359,643	231,359,643
Chromosome 5	167,246,402	1	167,246,402	167,246,402
Chromosome 6	224,559,537	1	224,559,537	224,559,537
Chromosome 7	207,076,058	1	207,076,058	207,076,058
Chromosome 8	144,012,018	1	144,012,018	144,012,018
Chromosome 9	101,698,841	1	101,698,841	101,698,841
Chromosome 10	75,573,270	1	75,573,270	75,573,270
Chromosome 11	220,349,319	1	220,349,319	220,349,319
Chromosome 12	148,690,698	1	148,690,698	148,690,698
Chromosome 13	152,771,447	1	152,771,447	152,771,447
Chromosome 14	46,742,321	1	46,742,321	46,742,321
Chromosome X	131,682,864	1	131,682,864	131,682,864
unplaced	36,337,273	167	36,337,273	2,487,487

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ASM_NN_V1

See Genome Information for Neogale vison

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear