U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1920278v2

Organism name:
Penaeus chinensis (fleshy prawn)
Infraspecific name:
Breed: Huanghai No. 1
Sex:
male
BioSample:
SAMN17293200
BioProject:
PRJNA691453
Submitter:
Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences
Date:
2021/07/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019202785.2 (latest)
RefSeq assembly accession:
GCF_019202785.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAGKSU01
Assembly method:
FALCON-Unzip v. MAY-2020
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
PacBio Sequel

IDs: 12418881 [UID] 32520528 [GenBank] 32549078 [RefSeq]

See Genome Information for Penaeus chinensis

Pathogen Detection Resources

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In March 2022 2 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length1,466,079,641
Total ungapped length1,465,281,441
Gaps between scaffolds0
Number of scaffolds1,061
Scaffold N5036,870,704
Scaffold L5018
Number of contigs9,043
Contig N50470,155
Contig L50763
Total number of chromosomes and plasmids44
Number of component sequences (WGS or clone)1,061

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_019202855.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM032926.1=NC_061819.10
Chromosome 2CM032927.1=NC_061820.10
Chromosome 3CM032928.1=NC_061821.10
Chromosome 4CM032929.1=NC_061822.10
Chromosome 5CM032930.1=NC_061823.10
Chromosome 6CM032931.1=NC_061824.10
Chromosome 7CM032932.1=NC_061825.10
Chromosome 8CM032933.1=NC_061826.10
Chromosome 9CM032934.1=NC_061827.10
Chromosome 10CM032935.1=NC_061828.10
Chromosome 11CM032936.1=NC_061829.10
Chromosome 12CM032937.1=NC_061830.10
Chromosome 13CM032938.1=NC_061831.10
Chromosome 14CM032939.1=NC_061832.10
Chromosome 15CM032940.1=NC_061833.10
Chromosome 16CM032941.1=NC_061834.10
Chromosome 17CM032942.1=NC_061835.10
Chromosome 18CM032943.1=NC_061836.10
Chromosome 19CM032944.1=NC_061837.10
Chromosome 20CM032945.1=NC_061838.10
Chromosome 21CM032946.1=NC_061839.10
Chromosome 22CM032947.1=NC_061840.10
Chromosome 23CM032948.1=NC_061841.10
Chromosome 24CM032949.1=NC_061842.10
Chromosome 25CM032950.1=NC_061843.10
Chromosome 26CM032951.1=NC_061844.10
Chromosome 27CM032952.1=NC_061845.10
Chromosome 28CM032953.1=NC_061846.10
Chromosome 29CM032954.1=NC_061847.10
Chromosome 30CM032955.1=NC_061848.10
Chromosome 31CM032956.1=NC_061849.10
Chromosome 32CM032957.1=NC_061850.10
Chromosome 33CM032958.1=NC_061851.10
Chromosome 34CM032959.1=NC_061852.10
Chromosome 35CM032960.1=NC_061853.10
Chromosome 36CM032961.1=NC_061854.10
Chromosome 37CM032962.1=NC_061855.10
Chromosome 38CM032963.1=NC_061856.10
Chromosome 39CM032964.1=NC_061857.10
Chromosome 40CM032965.1=NC_061858.10
Chromosome 41CM032966.1=NC_061859.10
Chromosome 42CM032967.1=NC_061860.10
Chromosome 43CM032968.1=NC_061861.10
unplacedn/an/an/a1,017

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,466,063,6371,0601,465,265,43736,870,7047,9820
Chromosome 140,208,653140,188,85340,208,6531980
Chromosome 245,038,060145,016,36045,038,0602170
Chromosome 343,985,487143,962,98743,985,4872250
Chromosome 448,777,264148,756,36448,777,2642090
Chromosome 539,620,681139,599,78139,620,6812090
Chromosome 640,361,378140,338,37840,361,3782300
Chromosome 746,085,662146,063,26246,085,6622240
Chromosome 844,059,871144,039,27144,059,8712060
Chromosome 942,986,129142,964,72942,986,1292140
Chromosome 1038,128,053138,107,05338,128,0532100
Chromosome 1143,810,079143,792,17943,810,0791790
Chromosome 1242,765,210142,743,41042,765,2102180
Chromosome 1332,301,851132,290,15132,301,8511170
Chromosome 1423,940,356123,927,95623,940,3561240
Chromosome 1525,786,014125,773,51425,786,0141250
Chromosome 1638,354,278138,336,07838,354,2781820
Chromosome 1722,922,466122,909,96622,922,4661250
Chromosome 1834,452,825134,439,22534,452,8251360
Chromosome 1938,699,171138,682,27138,699,1711690
Chromosome 2025,417,745125,400,84525,417,7451690
Chromosome 2128,872,970128,856,97028,872,9701600
Chromosome 2229,025,525129,008,72529,025,5251680
Chromosome 2324,342,607124,323,60724,342,6071900
Chromosome 2434,545,911134,528,51134,545,9111740
Chromosome 2521,990,613121,974,91321,990,6131570
Chromosome 2620,298,147120,283,04720,298,1471510
Chromosome 2732,416,841132,394,94132,416,8412190
Chromosome 2824,875,221124,856,32124,875,2211890
Chromosome 2933,207,952133,187,55233,207,9522040
Chromosome 3027,520,604127,498,60427,520,6042200
Chromosome 3136,933,079136,910,07936,933,0792300
Chromosome 3231,863,791131,845,59131,863,7911820
Chromosome 3338,874,940138,855,84038,874,9401910
Chromosome 3436,870,704136,852,20436,870,7041850
Chromosome 3537,432,560137,409,86037,432,5602270
Chromosome 3636,322,167136,300,36736,322,1672180
Chromosome 3735,694,073135,671,37335,694,0732270
Chromosome 3831,508,534131,487,63431,508,5342090
Chromosome 3929,410,878129,391,47829,410,8781940
Chromosome 4028,650,052128,633,95228,650,0521610
Chromosome 4127,768,748127,754,84827,768,7481390
Chromosome 4224,681,658124,666,15824,681,6581550
Chromosome 4320,712,561120,697,96120,712,5611460
unplaced14,542,2681,01714,542,26820,24300
MoleculeTotal
Length
Mitochondrion MT16,004