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Source database (GenBank or RefSeq) File type

IFAPA_SoseM_1

Organism name:

Solea senegalensis (Senegalese sole)

Isolate:

Sse05_10M

Sex:

male

BioSample:

SAMN15430148

BioProject:

PRJNA643826

Submitter:

IFAPA

Date:

2021/07/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019176455.1 (latest)

RefSeq assembly accession:

GCF_019176455.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAGKHQ01

Assembly method:

MaSuRCA v. 3.2.3

Expected final version:

yes

Genome coverage:

25.0x

Sequencing technology:

Oxford Nanopore MinION

IDs: 10479371 [UID] 27821598 [GenBank] 29145218 [RefSeq]

See Genome Information for Solea senegalensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019176455.1	≠	GCF_019176455.1	IFAPA_SoseM_1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	603,535,267
Total ungapped length	603,469,826
Gaps between scaffolds	0
Number of scaffolds	1,937
Scaffold N50	26,091,242
Scaffold L50	10
Number of contigs	2,599
Contig N50	1,188,264
Contig L50	138
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	1,937

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM032854.1	=	NC_058021.1	0
Linkage Group LG2	CM032855.1	=	NC_058022.1	0
Linkage Group LG3	CM032856.1	=	NC_058023.1	0
Linkage Group LG4	CM032857.1	=	NC_058024.1	0
Linkage Group LG5	CM032858.1	=	NC_058025.1	0
Linkage Group LG6	CM032859.1	=	NC_058026.1	0
Linkage Group LG7	CM032860.1	=	NC_058027.1	0
Linkage Group LG8	CM032861.1	=	NC_058028.1	0
Linkage Group LG9	CM032862.1	=	NC_058029.1	0
Linkage Group LG10	CM032863.1	=	NC_058030.1	0
Linkage Group LG11	CM032864.1	=	NC_058031.1	0
Linkage Group LG12	CM032865.1	=	NC_058032.1	0
Linkage Group LG13	CM032866.1	=	NC_058033.1	0
Linkage Group LG14	CM032867.1	=	NC_058034.1	0
Linkage Group LG15	CM032868.1	=	NC_058035.1	0
Linkage Group LG16	CM032869.1	=	NC_058036.1	0
Linkage Group LG17	CM032870.1	=	NC_058037.1	0
Linkage Group LG18	CM032871.1	=	NC_058041.1	0
Linkage Group LG19	CM032872.1	=	NC_058038.1	0
Linkage Group LG20	CM032873.1	=	NC_058039.1	0
Linkage Group LG21	CM032874.1	=	NC_058040.1	0
unplaced	n/a	n/a	n/a	1,915

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	603,518,608	1,936	603,453,167	26,091,242	662
Linkage Group LG1	42,924,012	1	42,919,612	42,924,012	44
Linkage Group LG2	36,396,255	1	36,393,255	36,396,255	30
Linkage Group LG3	33,319,822	1	33,316,622	33,319,822	32
Linkage Group LG4	27,129,084	1	27,125,623	27,129,084	35
Linkage Group LG5	27,692,037	1	27,688,837	27,692,037	32
Linkage Group LG6	26,866,643	1	26,864,043	26,866,643	26
Linkage Group LG7	28,334,760	1	28,331,960	28,334,760	28
Linkage Group LG8	27,361,452	1	27,358,352	27,361,452	31
Linkage Group LG9	25,679,769	1	25,676,759	25,679,769	31
Linkage Group LG10	25,170,845	1	25,166,345	25,170,845	45
Linkage Group LG11	26,846,769	1	26,843,269	26,846,769	35
Linkage Group LG12	25,840,656	1	25,837,656	25,840,656	30
Linkage Group LG13	23,154,965	1	23,153,165	23,154,965	18
Linkage Group LG14	26,091,242	1	26,088,042	26,091,242	32
Linkage Group LG15	22,903,974	1	22,901,574	22,903,974	24
Linkage Group LG16	21,637,702	1	21,635,192	21,637,702	26
Linkage Group LG17	21,095,432	1	21,092,532	21,095,432	29
Linkage Group LG18	19,718,725	1	19,716,515	19,718,725	23
Linkage Group LG19	21,051,312	1	21,048,712	21,051,312	26
Linkage Group LG20	20,166,255	1	20,163,345	20,166,255	30
Linkage Group LG21	19,202,697	1	19,200,097	19,202,697	26
unplaced	54,934,200	1,915	54,931,660	56,131	29

Assembly

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IFAPA_SoseM_1

See Genome Information for Solea senegalensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear