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Source database (GenBank or RefSeq) File type

ASM1917538v2

Organism name:

Lycium barbarum (goji berry)

Isolate:

Lr01

BioSample:

SAMN15311679

BioProject:

PRJNA640228

Submitter:

Fujian Agriculture and Forestry University

Date:

2021/07/08

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019175385.2 (latest)

RefSeq assembly accession:

GCF_019175385.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JAHTKO01

Assembly method:

smartdenovo v. v1.0

Expected final version:

yes

Genome coverage:

114.5x

Sequencing technology:

PacBio Sequel; Illumina HiSeq

IDs: 19298841 [UID] 49105528 [GenBank] 49118278 [RefSeq]

See Genome Information for Lycium barbarum

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019175385.2	≠	GCF_019175385.1	ASM1917538v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_019175385.1	n/a	n/a	ASM1917538v1	Chromosome	Replaced GenBank

Comment

In October 2023 1 sequence was suppressed because it was found to be a contaminant.

Global statistics

Total sequence length	1,669,814,490
Total ungapped length	1,668,964,069
Gaps between scaffolds	0
Number of scaffolds	166
Scaffold N50	137,364,012
Scaffold L50	6
Number of contigs	1,731
Contig N50	2,385,424
Contig L50	205
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	166

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM032830.1	=	NC_083337.1	0
Chromosome 2	CM032831.1	=	NC_083338.1	0
Chromosome 3	CM032832.1	=	NC_083339.1	0
Chromosome 4	CM032833.1	=	NC_083340.1	0
Chromosome 5	CM032834.1	=	NC_083341.1	0
Chromosome 6	CM032835.1	=	NC_083342.1	0
Chromosome 7	CM032836.1	=	NC_083343.1	0
Chromosome 8	CM032837.1	=	NC_083344.1	0
Chromosome 9	CM032838.1	=	NC_083345.1	0
Chromosome 10	CM032839.1	=	NC_083346.1	0
Chromosome 11	CM032840.1	=	NC_083347.1	0
Chromosome 12	CM032841.1	=	NC_083348.1	0
unplaced	n/a	n/a	n/a	153

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,669,658,834	165	1,668,808,413	137,364,012	1,565
Chromosome 1	171,835,435	1	171,790,418	171,835,435	105
Chromosome 2	153,603,042	1	153,386,072	153,603,042	204
Chromosome 3	149,360,239	1	149,318,684	149,360,239	124
Chromosome 4	149,041,705	1	148,979,517	149,041,705	162
Chromosome 5	143,530,904	1	143,447,987	143,530,904	132
Chromosome 6	137,364,012	1	137,329,351	137,364,012	95
Chromosome 7	134,699,017	1	134,656,691	134,699,017	136
Chromosome 8	133,540,852	1	133,491,591	133,540,852	113
Chromosome 9	126,384,085	1	126,358,262	126,384,085	93
Chromosome 10	125,083,490	1	124,957,626	125,083,490	144
Chromosome 11	124,265,054	1	124,202,439	124,265,054	110
Chromosome 12	106,533,526	1	106,505,802	106,533,526	80
unplaced	14,417,473	153	14,383,973	260,000	67

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ASM1917538v2

See Genome Information for Lycium barbarum

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear