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MEX_DaPlex

Organism name:
Danaus plexippus (monarch butterfly)
Sex:
female
BioSample:
SAMN16239029
BioProject:
PRJNA663267
Submitter:
Langebio / CINVESTAV
Date:
2021/04/26
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018135715.1 (latest)
RefSeq assembly accession:
GCF_018135715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAEQBL01
Assembly method:
Canu v. 1.6; Platanus v. 1.2.1; HalploMerger2 v. 20180603; Quickmerge v. 0.3; DBG2OLC v. a2034d768efda85062de8a6d6f84a8a463e65bbe
Expected final version:
yes
Genome coverage:
448.0x
Sequencing technology:
PacBio Sequel; Illumina HiSeq 4000

IDs: 9934711 [UID] 26469228 [GenBank] 49825058 [RefSeq]

See Genome Information for Danaus plexippus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length245,173,502
Total ungapped length245,169,302
Gaps between scaffolds0
Number of scaffolds66
Scaffold N508,158,176
Scaffold L5013
Number of contigs108
Contig N503,940,764
Contig L5021
Total number of chromosomes and plasmids30
Number of component sequences (WGS or clone)66

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018135725.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2CM030908.1=NC_083537.10
Chromosome 3n/an/an/a3
Chromosome 4CM030909.1=NC_083538.10
Chromosome 5CM030910.1=NC_083539.10
Chromosome 6CM030911.1=NC_083540.10
Chromosome 7CM030912.1=NC_083541.10
Chromosome 8CM030913.1=NC_083542.10
Chromosome 9n/an/an/a2
Chromosome 10CM030914.1=NC_083543.10
Chromosome 11CM030915.1=NC_083544.10
Chromosome 12CM030916.1=NC_083545.10
Chromosome 13n/an/an/a2
Chromosome 14CM030917.1=NC_083546.10
Chromosome 15CM030918.1=NC_083547.10
Chromosome 16n/an/an/a2
Chromosome 17CM030919.1=NC_083548.10
Chromosome 18n/an/an/a2
Chromosome 19CM030920.1=NC_083549.10
Chromosome 20CM030921.1=NC_083550.10
Chromosome 22n/an/an/a2
Chromosome 23CM030922.1=NC_083551.10
Chromosome 24CM030923.1=NC_083552.10
Chromosome 25CM030924.1=NC_083553.10
Chromosome 26CM030925.1=NC_083554.10
Chromosome 27CM030926.1=NC_083555.10
Chromosome 28CM030927.1=NC_083556.10
Chromosome 29n/an/an/a2
Chromosome 30CM030928.1=NC_083557.10
Chromosome 31CM030929.1=NC_083558.10
Chromosome ZCM030930.1=NC_083559.10
unplacedn/an/an/a28

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule245,173,50266245,169,3028,158,176420
Chromosome 2Assembled molecule10,098,950110,098,55010,098,95040
Chromosome 3AllAssembled moleculeUnlocalized scaffolds10,503,896010,503,89630310,503,696010,503,6963,346,66703,346,667202000
Chromosome 4Assembled molecule9,131,01019,130,6109,131,01040
Chromosome 5Assembled molecule9,019,87019,019,5709,019,87030
Chromosome 6Assembled molecule10,309,481110,309,38110,309,48110
Chromosome 7Assembled molecule8,067,86418,067,7648,067,86410
Chromosome 8Assembled molecule10,301,214110,301,01410,301,21420
Chromosome 9AllAssembled moleculeUnlocalized scaffolds9,377,67309,377,6732029,377,57309,377,5734,968,23004,968,230101000
Chromosome 10Assembled molecule9,427,84319,427,6439,427,84320
Chromosome 11Assembled molecule9,638,92219,638,8229,638,92210
Chromosome 12Assembled molecule8,158,17618,158,0768,158,17610
Chromosome 13AllAssembled moleculeUnlocalized scaffolds8,507,76708,507,7672028,507,66708,507,6677,664,42607,664,426101000
Chromosome 14Assembled molecule8,429,81518,429,6158,429,81520
Chromosome 15Assembled molecule9,645,91319,645,9139,645,91300
Chromosome 16AllAssembled moleculeUnlocalized scaffolds8,267,37008,267,3702028,267,27008,267,2704,997,66804,997,668101000
Chromosome 17Assembled molecule9,976,72219,976,6229,976,72210
Chromosome 18AllAssembled moleculeUnlocalized scaffolds7,763,99507,763,9952027,763,59507,763,5955,442,85205,442,852404000
Chromosome 19Assembled molecule8,977,43518,977,2358,977,43520
Chromosome 20Assembled molecule6,958,93116,958,7316,958,93120
Chromosome 22AllAssembled moleculeUnlocalized scaffolds6,636,21806,636,2182026,636,11806,636,1183,866,67603,866,676101000
Chromosome 23Assembled molecule6,260,40916,260,4096,260,40900
Chromosome 24Assembled molecule5,062,88615,062,8865,062,88600
Chromosome 25Assembled molecule6,018,11116,018,0116,018,11110
Chromosome 26Assembled molecule6,627,31216,627,1126,627,31220
Chromosome 27Assembled molecule5,088,22715,088,1275,088,22710
Chromosome 28Assembled molecule3,665,46913,665,3693,665,46910
Chromosome 29AllAssembled moleculeUnlocalized scaffolds3,772,40503,772,4052023,772,30503,772,3052,012,87102,012,871101000
Chromosome 30Assembled molecule3,498,34713,498,3473,498,34700
Chromosome 31Assembled molecule2,838,58812,838,5882,838,58800
Chromosome ZAssembled molecule16,343,425116,343,42516,343,42500
unplacedAssembled molecule6,799,258286,799,258584,51200