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Source database (GenBank or RefSeq) File type

AdamAnt_v2

Organism name:

Antechinus flavipes (yellow-footed antechinus)

Infraspecific name:

Ecotype: Samford, QLD, Australia

Isolate:

AdamAnt

Sex:

male

BioSample:

SAMN16807749

BioProject:

PRJNA565840

Submitter:

Nanjing Normal University

Date:

2021/01/06

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016432865.2 (latest)

RefSeq assembly accession:

GCF_016432865.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADWMD01

Assembly method:

Canu v. 1.7; HiC-Pro v. 2.8.0_devel; 3D-DNA v. 1.12

Expected final version:

yes

Genome coverage:

100.0x

Sequencing technology:

PacBio; BGISEQ-500; Hi-C

IDs: 14230911 [UID] 36981438 [GenBank] 37165688 [RefSeq]

See Genome Information for Antechinus flavipes

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016432865.2	≠	GCF_016432865.1	AdamAnt_v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_016432865.1	n/a	n/a	AdamAnt	Chromosome	Replaced GenBank

Comment

In October 2022 2 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	3,192,661,299
Total ungapped length	3,192,352,299
Gaps between scaffolds	0
Number of scaffolds	486
Scaffold N50	636,717,922
Scaffold L50	3
Number of contigs	1,104
Contig N50	51,843,704
Contig L50	16
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	486

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM028217.1	=	NC_067398.1	0
Chromosome 2	CM028218.1	=	NC_067399.1	0
Chromosome 3	CM028219.1	=	NC_067400.1	0
Chromosome 4	CM028220.1	=	NC_067401.1	0
Chromosome 5	CM028221.1	=	NC_067402.1	0
Chromosome 6	CM028222.1	=	NC_067403.1	0
Chromosome X	CM028223.1	=	NC_067404.1	0
unplaced	n/a	n/a	n/a	478

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,192,643,918	485	3,192,334,918	636,717,922	618
Chromosome 1	727,308,865	1	727,265,365	727,308,865	87
Chromosome 2	686,337,178	1	686,296,178	686,337,178	82
Chromosome 3	636,717,922	1	636,645,422	636,717,922	145
Chromosome 4	486,195,733	1	486,171,233	486,195,733	49
Chromosome 5	300,479,852	1	300,428,352	300,479,852	103
Chromosome 6	264,590,327	1	264,559,327	264,590,327	62
Chromosome X	86,570,782	1	86,525,782	86,570,782	90
unplaced	4,443,259	478	4,443,259	9,994	0

Assembly

Genome Assembly

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AdamAnt_v2

See Genome Information for Antechinus flavipes

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear