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Source database (GenBank or RefSeq) File type

ASM1584641v1

Organism name:

Triplophysa dalaica (bony fishes)

Isolate:

WHDGS20190420

Sex:

female

BioSample:

SAMN14582390

BioProject:

PRJNA624716

Submitter:

HeNan Normal University and Wuhan diggers

Date:

2020/12/11

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_015846415.1 (latest)

RefSeq assembly accession:

GCF_015846415.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JABZFK01

Assembly method:

FALCON v. 0.3.0

Expected final version:

yes

Genome coverage:

200.0x

Sequencing technology:

PacBio Sequel II

IDs: 8781351 [UID] 23785448 [GenBank] 43006458 [RefSeq]

See Genome Information for Triplophysa dalaica

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015846415.1	≠	GCF_015846415.1	ASM1584641v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	607,940,176
Total ungapped length	607,928,576
Gaps between scaffolds	0
Number of scaffolds	51
Scaffold N50	23,627,495
Scaffold L50	12
Number of contigs	167
Contig N50	9,273,388
Contig L50	21
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	167

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM027539.1	=	NC_079542.1	0
Chromosome 2	CM027540.1	=	NC_079543.1	0
Chromosome 3	CM027541.1	=	NC_079544.1	0
Chromosome 4	CM027542.1	=	NC_079545.1	0
Chromosome 5	CM027543.1	=	NC_079546.1	0
Chromosome 6	CM027544.1	=	NC_079547.1	0
Chromosome 7	CM027545.1	=	NC_079548.1	0
Chromosome 8	CM027546.1	=	NC_079549.1	0
Chromosome 9	CM027547.1	=	NC_079550.1	0
Chromosome 10	CM027548.1	=	NC_079551.1	0
Chromosome 11	CM027549.1	=	NC_079552.1	0
Chromosome 12	CM027550.1	=	NC_079553.1	0
Chromosome 13	CM027551.1	=	NC_079554.1	0
Chromosome 14	CM027552.1	=	NC_079555.1	0
Chromosome 15	CM027553.1	=	NC_079556.1	0
Chromosome 16	CM027554.1	=	NC_079557.1	0
Chromosome 17	CM027555.1	=	NC_079558.1	0
Chromosome 18	CM027556.1	=	NC_079559.1	0
Chromosome 19	CM027557.1	=	NC_079560.1	0
Chromosome 20	CM027558.1	=	NC_079561.1	0
Chromosome 21	CM027559.1	=	NC_079562.1	0
Chromosome 22	CM027560.1	=	NC_079563.1	0
Chromosome 23	CM027561.1	=	NC_079564.1	0
Chromosome 24	CM027562.1	=	NC_079565.1	0
Chromosome 25	CM027563.1	=	NC_079566.1	0
unplaced	n/a	n/a	n/a	25

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	607,923,607	50	607,912,007	23,627,495	116
Chromosome 1	36,521,567	1	36,521,167	36,521,567	4
Chromosome 2	30,310,199	1	30,309,999	30,310,199	2
Chromosome 3	28,993,233	1	28,992,633	28,993,233	6
Chromosome 4	28,938,999	1	28,938,699	28,938,999	3
Chromosome 5	28,276,215	1	28,272,815	28,276,215	34
Chromosome 6	26,562,059	1	26,561,459	26,562,059	6
Chromosome 7	25,427,966	1	25,427,566	25,427,966	4
Chromosome 8	25,320,011	1	25,319,911	25,320,011	1
Chromosome 9	24,681,035	1	24,680,535	24,681,035	5
Chromosome 10	24,312,322	1	24,311,422	24,312,322	9
Chromosome 11	23,836,536	1	23,836,136	23,836,536	4
Chromosome 12	23,627,495	1	23,627,195	23,627,495	3
Chromosome 13	23,332,616	1	23,332,316	23,332,616	3
Chromosome 14	23,030,841	1	23,030,541	23,030,841	3
Chromosome 15	22,910,396	1	22,910,196	22,910,396	2
Chromosome 16	22,755,625	1	22,755,325	22,755,625	3
Chromosome 17	22,742,303	1	22,742,103	22,742,303	2
Chromosome 18	22,063,233	1	22,063,033	22,063,233	2
Chromosome 19	21,103,047	1	21,102,747	21,103,047	3
Chromosome 20	21,097,118	1	21,096,918	21,097,118	2
Chromosome 21	20,718,487	1	20,718,287	20,718,487	2
Chromosome 22	20,510,605	1	20,510,405	20,510,605	2
Chromosome 23	20,345,738	1	20,345,238	20,345,738	5
Chromosome 24	17,133,254	1	17,132,854	17,133,254	4
Chromosome 25	16,497,229	1	16,497,029	16,497,229	2
unplaced	6,875,478	25	6,875,478	404,918	0

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ASM1584641v1

See Genome Information for Triplophysa dalaica

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear