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Source database (GenBank or RefSeq) File type

Motacilla_alba_V1.0_pri

Organism name:

Motacilla alba alba (white wagtail)

Isolate:

MOTALB_02

Sex:

male

BioSample:

SAMN16093224

BioProject:

PRJNA662706

Submitter:

Uppsala University

Date:

2020/12/08

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_015832195.1 (latest)

RefSeq assembly accession:

GCF_015832195.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JACXWE01

Assembly method:

FALCON v. 2.2.3; FALCON-Unzip v. 2.2.3; Juicer v. 1.6; 3D-DNA v. 180922

Expected final version:

yes

Genome coverage:

18x

Sequencing technology:

PacBio Sequel II HiFi

Linked assembly:

GCA_015832205.1 (alternate pseudohaplotype of diploid)

IDs: 8722891 [UID] 23658508 [GenBank] 23778528 [RefSeq]

See Genome Information for Motacilla alba

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015832195.1	≠	GCF_015832195.1	Motacilla_alba_V1.0_pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,072,670,728
Total ungapped length	1,071,767,228
Gaps between scaffolds	0
Number of scaffolds	619
Scaffold N50	72,386,170
Scaffold L50	6
Number of contigs	1,525
Contig N50	8,515,530
Contig L50	32
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	619

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM027476.1	=	NC_052016.1	0
Chromosome 2	CM027477.1	=	NC_052017.1	0
Chromosome 3	CM027478.1	=	NC_052018.1	0
Chromosome 4	CM027479.1	=	NC_052019.1	0
Chromosome 5	CM027480.1	=	NC_052020.1	0
Chromosome 6	CM027481.1	=	NC_052021.1	0
Chromosome 7	CM027482.1	=	NC_052022.1	0
Chromosome 8	CM027483.1	=	NC_052023.1	0
Chromosome 9	CM027484.1	=	NC_052024.1	0
Chromosome 10	CM027485.1	=	NC_052025.1	0
Chromosome 11	CM027486.1	=	NC_052026.1	0
Chromosome 12	CM027487.1	=	NC_052027.1	0
Chromosome 13	CM027488.1	=	NC_052028.1	0
Chromosome 14	CM027489.1	=	NC_052029.1	0
Chromosome 15	CM027490.1	=	NC_052030.1	0
Chromosome 1A	CM027505.1	=	NC_052031.1	0
Chromosome 17	CM027491.1	=	NC_052032.1	0
Chromosome 18	CM027492.1	=	NC_052033.1	0
Chromosome 19	CM027493.1	=	NC_052034.1	0
Chromosome 20	CM027494.1	=	NC_052035.1	0
Chromosome 21	CM027495.1	=	NC_052036.1	0
Chromosome 22	CM027496.1	=	NC_052037.1	0
Chromosome 23	CM027497.1	=	NC_052038.1	0
Chromosome 24	CM027498.1	=	NC_052039.1	0
Chromosome 25	CM027499.1	=	NC_052040.1	0
Chromosome 26	CM027500.1	=	NC_052041.1	0
Chromosome 27	CM027501.1	=	NC_052042.1	0
Chromosome 28	CM027502.1	=	NC_052043.1	0
Chromosome 29	CM027503.1	=	NC_052044.1	0
Chromosome 4A	CM027506.1	=	NC_052045.1	0
Chromosome Z	CM027504.1	=	NC_052046.1	0
unplaced	n/a	n/a	n/a	587

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,072,653,902	618	1,071,750,402	72,386,170	906
Chromosome 1	115,943,826	1	115,911,326	115,943,826	33
Chromosome 2	152,195,414	1	152,155,414	152,195,414	40
Chromosome 3	113,979,315	1	113,932,315	113,979,315	47
Chromosome 4	72,571,817	1	72,548,817	72,571,817	23
Chromosome 5	62,416,885	1	62,395,885	62,416,885	21
Chromosome 6	36,204,362	1	36,197,362	36,204,362	7
Chromosome 7	38,394,532	1	38,381,532	38,394,532	13
Chromosome 8	30,926,046	1	30,919,046	30,926,046	7
Chromosome 9	25,503,045	1	25,489,545	25,503,045	14
Chromosome 10	20,668,280	1	20,654,280	20,668,280	14
Chromosome 11	21,116,697	1	21,105,697	21,116,697	11
Chromosome 12	21,159,039	1	21,149,039	21,159,039	10
Chromosome 13	18,319,550	1	18,305,550	18,319,550	14
Chromosome 14	16,599,253	1	16,586,753	16,599,253	13
Chromosome 15	14,048,245	1	14,033,245	14,048,245	15
Chromosome 1A	72,386,170	1	72,364,170	72,386,170	22
Chromosome 17	11,273,985	1	11,264,485	11,273,985	10
Chromosome 18	12,107,067	1	12,089,567	12,107,067	18
Chromosome 19	11,138,761	1	11,134,761	11,138,761	4
Chromosome 20	15,463,368	1	15,443,368	15,463,368	20
Chromosome 21	8,008,891	1	7,996,891	8,008,891	12
Chromosome 22	4,811,177	1	4,789,177	4,811,177	22
Chromosome 23	6,787,493	1	6,769,993	6,787,493	18
Chromosome 24	7,380,625	1	7,369,125	7,380,625	11
Chromosome 25	2,389,221	1	2,364,221	2,389,221	25
Chromosome 26	6,236,693	1	6,221,693	6,236,693	15
Chromosome 27	5,138,044	1	5,116,044	5,138,044	22
Chromosome 28	5,436,210	1	5,409,210	5,436,210	27
Chromosome 29	2,185,096	1	2,163,096	2,185,096	22
Chromosome 4A	19,754,461	1	19,747,461	19,754,461	7
Chromosome Z	75,743,258	1	75,689,258	75,743,258	54
unplaced	46,367,076	587	46,052,076	157,001	315

Assembly

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Motacilla_alba_V1.0_pri

See Genome Information for Motacilla alba

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear