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fSebUmb1.pri

Organism name:
Sebastes umbrosus (honeycomb rockfish)
Isolate:
fSebUmb1
Sex:
male
BioSample:
SAMN12629503
BioProject:
PRJNA562005
Submitter:
Vertebrate Genomes Project
Date:
2020/11/03
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_015220745.1 (latest)
RefSeq assembly accession:
GCF_015220745.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JADCQQ01
Assembly method:
FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x x v. 3.2.1_04122018; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-07; VGP assembly pipeline v. 1.6
Expected final version:
no
Genome coverage:
45.05x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_015220095.1 (alternate pseudohaplotype of diploid)

IDs: 8409301 [UID] 22893738 [GenBank] 23042528 [RefSeq]

See Genome Information for Sebastes umbrosus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length800,904,020
Total ungapped length799,510,128
Gaps between scaffolds0
Number of scaffolds138
Scaffold N5034,912,176
Scaffold L5011
Number of contigs353
Contig N5011,445,908
Contig L5024
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)138

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015220755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM026752.1=NC_051269.10
Chromosome 2CM026753.1=NC_051270.10
Chromosome 3CM026754.1=NC_051271.11
Chromosome 4CM026755.1=NC_051272.10
Chromosome 5CM026756.1=NC_051273.10
Chromosome 6CM026757.1=NC_051274.10
Chromosome 7CM026758.1=NC_051275.10
Chromosome 8CM026759.1=NC_051276.10
Chromosome 9CM026760.1=NC_051277.10
Chromosome 10CM026761.1=NC_051278.10
Chromosome 11CM026762.1=NC_051279.10
Chromosome 12CM026763.1=NC_051280.10
Chromosome 13CM026764.1=NC_051281.12
Chromosome 14CM026765.1=NC_051282.12
Chromosome 15CM026766.1=NC_051283.10
Chromosome 16CM026767.1=NC_051284.10
Chromosome 17CM026768.1=NC_051285.10
Chromosome 18CM026769.1=NC_051286.10
Chromosome 19CM026770.1=NC_051287.10
Chromosome 20CM026771.1=NC_051288.11
Chromosome 21CM026772.1=NC_051289.10
Chromosome 22CM026773.1=NC_051290.11
Chromosome 23CM026774.1=NC_051291.10
Chromosome 24CM026775.1=NC_051292.12
unplacedn/an/an/a105

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule800,904,020138799,510,12834,912,1762150
Chromosome 1Assembled molecule44,063,945143,997,78444,063,945200
Chromosome 2Assembled molecule41,642,849141,590,25941,642,84960
Chromosome 3AllAssembled moleculeUnlocalized scaffolds41,274,85541,172,918101,93721141,265,08241,163,145101,93741,172,91841,172,918101,937440000
Chromosome 4Assembled molecule39,310,580139,207,53539,310,580150
Chromosome 5Assembled molecule38,607,003138,581,28138,607,00360
Chromosome 6Assembled molecule36,325,703136,293,81436,325,703130
Chromosome 7Assembled molecule36,146,424136,084,96636,146,42460
Chromosome 8Assembled molecule36,006,835135,809,35136,006,83560
Chromosome 9Assembled molecule35,235,349135,216,14735,235,349140
Chromosome 10Assembled molecule34,964,250134,929,71634,964,25080
Chromosome 11Assembled molecule34,912,176134,824,84734,912,17680
Chromosome 12Assembled molecule34,196,205134,176,61134,196,20540
Chromosome 13AllAssembled moleculeUnlocalized scaffolds33,583,45833,154,565428,89331233,577,00433,148,311428,69333,154,56533,154,565250,492651000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds33,077,05532,625,488451,56731233,042,40332,590,836451,56732,625,48832,625,488278,450880000
Chromosome 15Assembled molecule32,625,529132,574,97032,625,52970
Chromosome 16Assembled molecule32,153,643132,151,08432,153,64390
Chromosome 17Assembled molecule30,648,620130,602,66530,648,62090
Chromosome 18Assembled molecule29,458,520129,436,89429,458,52060
Chromosome 19Assembled molecule28,767,290128,766,11628,767,29060
Chromosome 20AllAssembled moleculeUnlocalized scaffolds27,830,05327,725,676104,37721127,813,99527,709,641104,35427,725,67627,725,676104,377651000
Chromosome 21Assembled molecule27,312,080127,290,71027,312,08070
Chromosome 22AllAssembled moleculeUnlocalized scaffolds24,902,07224,788,685113,38721124,521,46024,408,073113,38724,788,68524,788,685113,38714140000
Chromosome 23Assembled molecule23,426,545123,418,40023,426,54540
Chromosome 24AllAssembled moleculeUnlocalized scaffolds16,958,57716,640,398318,17931216,863,52516,545,746317,77916,640,39816,640,398204,12614122000
unplacedAssembled molecule7,474,4041057,473,50987,54790