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fEleEle1.pri

Organism name:
Electrophorus electricus (electric eel)
Isolate:
fEleEle1
BioSample:
SAMN12623625
BioProject:
PRJNA561981
Submitter:
Vertebrate Genomes Project
Date:
2020/06/23
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_013358815.1 (latest)
RefSeq assembly accession:
GCF_013358815.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JABVME01
Assembly method:
FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-17; VGP assembly pipeline individual v. 1.6
Expected final version:
no
Genome coverage:
52.97x
Sequencing technology:
PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_013347915.1 (alternate pseudohaplotype of diploid)

IDs: 7292961 [UID] 20129578 [GenBank] 20291838 [RefSeq]

See Genome Information for Electrophorus electricus

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the principal haplotype of the diploid genome Electrophorus electricus and includes the chromosomes. The alternate haplotype sequences are in WGS project JABVMF000000000

Global statistics

Total sequence length589,358,956
Total ungapped length578,759,189
Gaps between scaffolds0
Number of scaffolds89
Scaffold N5025,664,172
Scaffold L5010
Number of contigs315
Contig N507,062,559
Contig L5025
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)89

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_013358875.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM023680.1=NC_049535.10
Chromosome 2CM023681.1=NC_049536.10
Chromosome 3CM023682.1=NC_049537.10
Chromosome 4CM023683.1=NC_049538.10
Chromosome 5CM023684.1=NC_049539.110
Chromosome 6CM023685.1=NC_049540.10
Chromosome 7CM023686.1=NC_049541.10
Chromosome 8CM023687.1=NC_049542.10
Chromosome 9CM023688.1=NC_049543.10
Chromosome 10CM023689.1=NC_049544.10
Chromosome 11CM023690.1=NC_049545.10
Chromosome 12CM023691.1=NC_049546.10
Chromosome 13CM023692.1=NC_049547.10
Chromosome 14CM023693.1=NC_049548.10
Chromosome 15CM023694.1=NC_049549.10
Chromosome 16CM023695.1=NC_049550.10
Chromosome 17CM023696.1=NC_049551.10
Chromosome 18CM023697.1=NC_049552.10
Chromosome 19CM023698.1=NC_049553.10
Chromosome 20CM023699.1=NC_049554.10
Chromosome 21CM023700.1=NC_049555.10
Chromosome 22CM023701.1=NC_049556.10
Chromosome 23CM023702.1=NC_049557.10
Chromosome 24CM023703.1=NC_049558.10
Chromosome 25CM023704.1=NC_049559.10
Chromosome 26CM023705.1=NC_049560.10
unplacedn/an/an/a53

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule589,358,95689578,759,18925,664,1722260
Chromosome 1Assembled molecule36,391,443136,021,96136,391,44380
Chromosome 2Assembled molecule35,831,752135,830,45235,831,75270
Chromosome 3Assembled molecule32,540,680132,540,48032,540,68010
Chromosome 4Assembled molecule32,347,915131,227,24532,347,915120
Chromosome 5AllAssembled moleculeUnlocalized scaffolds31,119,23330,137,670981,5631111026,575,24625,593,683981,56330,137,67030,137,670129,34527270000
Chromosome 6Assembled molecule30,780,680130,779,98030,780,68050
Chromosome 7Assembled molecule28,649,539128,604,58028,649,53970
Chromosome 8Assembled molecule27,587,819126,420,38727,587,819230
Chromosome 9Assembled molecule26,196,259126,132,45826,196,259230
Chromosome 10Assembled molecule25,664,172125,658,84425,664,17230
Chromosome 11Assembled molecule25,558,895125,557,19525,558,89570
Chromosome 12Assembled molecule23,225,763123,207,22923,225,76350
Chromosome 13Assembled molecule22,788,488122,786,45122,788,488100
Chromosome 14Assembled molecule22,703,151121,852,01122,703,15190
Chromosome 15Assembled molecule19,344,341119,344,14119,344,34120
Chromosome 16Assembled molecule18,983,019118,873,85118,983,019110
Chromosome 17Assembled molecule18,154,453117,974,38118,154,45350
Chromosome 18Assembled molecule17,062,102116,673,23817,062,102100
Chromosome 19Assembled molecule16,409,991116,334,16716,409,99160
Chromosome 20Assembled molecule15,907,486115,907,38615,907,48610
Chromosome 21Assembled molecule15,813,368115,542,13415,813,36860
Chromosome 22Assembled molecule14,621,190113,693,41714,621,190150
Chromosome 23Assembled molecule12,386,329112,385,92912,386,32930
Chromosome 24Assembled molecule11,982,566111,982,06611,982,56630
Chromosome 25Assembled molecule11,969,312111,517,15011,969,31270
Chromosome 26Assembled molecule10,945,573110,944,77310,945,57360
unplacedAssembled molecule4,393,437534,392,037124,06140