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Source database (GenBank or RefSeq) File type

BIME_Dsil_1.4

Organism name:

Dermacentor silvarum (mites & ticks)

Isolate:

Dsil-2018

BioSample:

SAMN14941059

BioProject:

PRJNA633311

Submitter:

TIGMIC Group

Date:

2022/06/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_013339745.2 (latest)

RefSeq assembly accession:

GCF_013339745.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JABSTS01

Assembly method:

SOAPdenovo v. 1.0; FALCON v. 1.0; Canu v. 1.7; Wtdbg v. 1.1.006; Quickmerge v. unknown

Expected final version:

yes

Genome coverage:

82x

Sequencing technology:

PacBio Sequel

IDs: 13122271 [UID] 34292138 [GenBank] 34808308 [RefSeq]

See Genome Information for Dermacentor silvarum

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013339745.2	≠	GCF_013339745.2	BIME_Dsil_1.4	Chromosome	Latest GenBank, Latest RefSeq
GCA_013339745.1	≠	GCF_013339745.1	ASM1333974v1	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Annotation was added to the contigs in November 2021.
Foreign sequences were removed from JABSTS010001093.1 in June 2022

Global statistics

Total sequence length	2,474,308,340
Total ungapped length	2,472,022,882
Gaps between scaffolds	0
Number of scaffolds	1,665
Scaffold N50	189,477,455
Scaffold L50	5
Number of contigs	15,182
Contig N50	339,999
Contig L50	1,940
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	1,665

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023470.1	=	NC_051154.1	0
Chromosome 2	CM023471.1	=	NC_051155.1	0
Chromosome 3	CM023472.1	=	NC_051156.1	0
Chromosome 4	CM023473.2	=	NC_051157.2	0
Chromosome 5	CM023474.1	=	NC_051158.1	0
Chromosome 6	CM023475.1	=	NC_051159.1	0
Chromosome 7	CM023476.1	=	NC_051160.1	0
Chromosome 8	CM023477.1	=	NC_051161.1	0
Chromosome 9	CM023478.1	=	NC_051162.1	0
Chromosome 10	CM023479.1	=	NC_051163.1	0
Chromosome 11	CM023480.1	=	NC_051164.1	0
unplaced	n/a	n/a	n/a	1,653

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,474,293,395	1,664	2,472,007,937	189,477,455	13,519
Chromosome 1	452,708,060	1	452,520,860	452,708,060	1,872
Chromosome 2	262,747,232	1	262,608,432	262,747,232	1,388
Chromosome 3	235,015,587	1	234,877,562	235,015,587	1,381
Chromosome 4	233,444,251	1	232,380,184	233,444,251	1,305
Chromosome 5	189,477,455	1	189,351,255	189,477,455	1,262
Chromosome 6	188,848,606	1	188,765,006	188,848,606	836
Chromosome 7	187,972,860	1	187,830,960	187,972,860	1,419
Chromosome 8	185,023,807	1	184,928,007	185,023,807	958
Chromosome 9	167,091,460	1	166,971,360	167,091,460	1,201
Chromosome 10	160,701,829	1	160,596,729	160,701,829	1,051
Chromosome 11	121,800,482	1	121,716,182	121,800,482	843
unplaced	89,461,766	1,653	89,461,400	60,001	3

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BIME_Dsil_1.4

See Genome Information for Dermacentor silvarum

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear