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Source database (GenBank or RefSeq) File type

BIME_Rsan_1.4

Organism name:

Rhipicephalus sanguineus (brown dog tick)

Isolate:

Rsan-2018

BioSample:

SAMN14941062

BioProject:

PRJNA633311

Submitter:

TIGMIC Group

Date:

2022/06/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_013339695.2 (latest)

RefSeq assembly accession:

GCF_013339695.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JABSTV01

Assembly method:

SOAPdenovo v. 1.0; FALCON v. 1.0; Canu v. 1.7; Wtdbg v. 1.1.006; Quickmerge v. unknown

Expected final version:

yes

Genome coverage:

78x

Sequencing technology:

PacBio Sequel

IDs: 13122771 [UID] 34298078 [GenBank] 34580118 [RefSeq]

See Genome Information for Rhipicephalus sanguineus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013339695.2	≠	GCF_013339695.2	BIME_Rsan_1.4	Chromosome	Latest GenBank, Latest RefSeq
GCA_013339695.1	≠	GCF_013339695.1	ASM1333969v1	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Annotation was added to the contigs in November 2021.
Foreign sequences were removed from JABSTV010001255.1 in June 2022, and JABSTV010002282 was suppressed then because it was found to be a contaminant

Global statistics

Total sequence length	2,365,502,231
Total ungapped length	2,362,795,055
Gaps between scaffolds	0
Number of scaffolds	2,327
Scaffold N50	208,696,187
Scaffold L50	5
Number of contigs	12,685
Contig N50	541,094
Contig L50	1,116
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	2,327

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023520.1	=	NC_051176.1	0
Chromosome 2	CM023521.1	=	NC_051177.1	0
Chromosome 3	CM023522.1	=	NC_051178.1	0
Chromosome 4	CM023523.1	=	NC_051179.1	0
Chromosome 5	CM023524.1	=	NC_051180.1	0
Chromosome 6	CM023525.1	=	NC_051181.1	0
Chromosome 7	CM023526.1	=	NC_051182.1	0
Chromosome 8	CM023527.1	=	NC_051183.1	0
Chromosome 9	CM023528.2	=	NC_051184.2	0
Chromosome 10	CM023529.1	=	NC_051185.1	0
Chromosome 11	CM023530.1	=	NC_051186.1	0
unplaced	n/a	n/a	n/a	2,316

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,365,502,231	2,327	2,362,795,055	208,696,187	10,359
Chromosome 1	340,706,149	1	340,604,549	340,706,149	1,016
Chromosome 2	238,895,976	1	238,797,776	238,895,976	982
Chromosome 3	234,107,715	1	233,942,013	234,107,715	1,655
Chromosome 4	211,849,473	1	211,753,773	211,849,473	957
Chromosome 5	208,696,187	1	208,615,087	208,696,187	811
Chromosome 6	178,078,338	1	177,998,538	178,078,338	798
Chromosome 7	172,913,789	1	172,811,289	172,913,789	1,025
Chromosome 8	171,792,058	1	171,697,858	171,792,058	942
Chromosome 9	154,776,919	1	153,045,645	154,776,919	602
Chromosome 10	152,989,824	1	152,908,624	152,989,824	812
Chromosome 11	145,390,364	1	145,314,464	145,390,364	759
unplaced	155,305,439	2,316	155,305,439	70,592	0

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BIME_Rsan_1.4

See Genome Information for Rhipicephalus sanguineus

Pathogen Detection Resources

History (Show revision history)

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