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Source database (GenBank or RefSeq) File type

C_canadensis_v1

Organism name:

Erigeron canadensis (horseweed)

Isolate:

Cc75

BioSample:

SAMN13170886

BioProject:

PRJNA586872

Submitter:

Agriculture and Agrifood Canada

Date:

2020/03/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_010389155.1 (latest)

RefSeq assembly accession:

GCF_010389155.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome Pltd
Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

WJPJ01

Assembly method:

CANU v. 1.8; Proximo v. 2.0

Expected final version:

yes

Genome coverage:

248.0x

Sequencing technology:

PacBio; Illumina; Hi-C

IDs: 5703791 [UID] 16544068 [GenBank] 28903848 [RefSeq]

See Genome Information for Erigeron canadensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_010389155.1	≠	GCF_010389155.1	C_canadensis_v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	426,376,474
Total ungapped length	426,326,274
Gaps between scaffolds	0
Number of scaffolds	357
Scaffold N50	45,539,152
Scaffold L50	5
Number of contigs	859
Contig N50	1,620,735
Contig L50	72
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	357

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM021151.1	=	NC_057761.1	0
Chromosome 2	CM021152.1	=	NC_057762.1	0
Chromosome 3	CM021153.1	=	NC_057763.1	0
Chromosome 4	CM021154.1	=	NC_057764.1	0
Chromosome 5	CM021155.1	=	NC_057765.1	0
Chromosome 6	CM021156.1	=	NC_057766.1	0
Chromosome 7	CM021157.1	=	NC_057767.1	0
Chromosome 8	CM021158.1	=	NC_057768.1	0
Chromosome 9	CM021159.1	=	NC_057769.1	0
unplaced	n/a	n/a	n/a	347

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	426,223,753	356	426,173,553	45,539,152	502
Chromosome 1	60,574,678	1	60,568,478	60,574,678	62
Chromosome 2	46,940,054	1	46,934,054	46,940,054	60
Chromosome 3	47,582,799	1	47,576,999	47,582,799	58
Chromosome 4	45,265,620	1	45,260,820	45,265,620	48
Chromosome 5	45,539,152	1	45,532,652	45,539,152	65
Chromosome 6	44,637,604	1	44,630,904	44,637,604	67
Chromosome 7	39,352,857	1	39,347,857	39,352,857	50
Chromosome 8	50,140,777	1	50,135,977	50,140,777	48
Chromosome 9	37,882,517	1	37,878,117	37,882,517	44
unplaced	8,307,695	347	8,307,695	24,581	0

Assembly

Genome Assembly

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C_canadensis_v1

See Genome Information for Erigeron canadensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear