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fArcCen1

Organism name:
Archocentrus centrarchus (flier cichlid)
Isolate:
MPI-CPG fArcCen1
Sex:
male
BioSample:
SAMN09948522
BioProject:
PRJNA489129
Submitter:
Vertebrate Genomes Project
Date:
2019/08/01
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_007364275.2 (latest)
RefSeq assembly accession:
GCF_007364275.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
STFV01
Assembly method:
FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10x v. 2.1; Bionano Solve DLS v. 3.2.1; Salsa2 v. 2.0; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-02-08; VGP standard assembly pipeline v. 1.0
Expected final version:
no
Genome coverage:
76.0x
Sequencing technology:
PacBio Sequel I; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C
Linked assembly:
GCA_007364235.1 (alternate pseudohaplotype of diploid)

IDs: 4253331 [UID] 12982938 [GenBank] 13145758 [RefSeq]

See Genome Information for Archocentrus centrarchus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the principal haplotype of the diploid genome Archocentrus centrarchus and includes the chromosomes. The alternate haplotype sequences are in WGS project STFW00000000.

Global statistics

Total sequence length932,930,362
Total ungapped length916,026,903
Gaps between scaffolds0
Number of scaffolds188
Scaffold N5035,590,001
Scaffold L5013
Number of contigs926
Contig N502,146,538
Contig L50129
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)188

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007364325.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM017272.1=NC_044346.10
Chromosome 2CM017273.1=NC_044347.10
Chromosome 3CM017274.1=NC_044348.10
Chromosome 4CM017275.1=NC_044349.10
Chromosome 5CM017276.1=NC_044350.10
Chromosome 6CM017277.1=NC_044351.10
Chromosome 7CM017278.1=NC_044352.10
Chromosome 8CM017279.1=NC_044353.10
Chromosome 9CM017280.1=NC_044354.10
Chromosome 10CM017281.1=NC_044355.10
Chromosome 11CM017282.1=NC_044356.10
Chromosome 12CM017283.1=NC_044357.10
Chromosome 13CM017284.1=NC_044358.10
Chromosome 14CM017285.1=NC_044359.10
Chromosome 15CM017286.1=NC_044360.10
Chromosome 16CM017287.1=NC_044361.10
Chromosome 17CM017288.1=NC_044362.10
Chromosome 18CM017446.1=NC_044363.11
Chromosome 19CM017289.1=NC_044364.10
Chromosome 20CM017290.1=NC_044365.10
Chromosome 21CM017291.1=NC_044366.10
Chromosome 22CM017292.1=NC_044367.10
Chromosome 23CM017293.1=NC_044368.10
Chromosome 24CM017294.1=NC_044369.10
unplacedn/an/an/a163

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule932,930,362188916,026,90335,590,0017380
Chromosome 1Assembled molecule40,720,952140,414,13540,720,952350
Chromosome 2Assembled molecule31,460,851130,852,67531,460,851350
Chromosome 3Assembled molecule36,298,665134,857,42336,298,665220
Chromosome 4Assembled molecule38,523,138138,520,30738,523,138190
Chromosome 5Assembled molecule36,312,066135,978,45836,312,066280
Chromosome 6Assembled molecule36,044,076135,862,14136,044,076200
Chromosome 7Assembled molecule37,817,259137,704,10137,817,259330
Chromosome 8Assembled molecule30,379,552130,142,74230,379,552140
Chromosome 9Assembled molecule28,334,081127,595,20528,334,081190
Chromosome 10Assembled molecule39,882,982139,249,89539,882,982290
Chromosome 11Assembled molecule36,498,288136,290,58536,498,288260
Chromosome 12Assembled molecule26,466,047126,343,05026,466,047130
Chromosome 13Assembled molecule43,489,282143,158,93543,489,282340
Chromosome 14Assembled molecule38,701,125137,493,66538,701,125370
Chromosome 15Assembled molecule30,423,438130,368,36330,423,438160
Chromosome 16Assembled molecule38,360,014138,104,75738,360,014270
Chromosome 17Assembled molecule35,571,081133,535,69935,571,081230
Chromosome 18AllAssembled moleculeUnlocalized scaffolds33,431,97323,904,1449,527,82921133,244,45623,717,8539,526,60323,904,14423,904,1449,527,82926206000
Chromosome 19Assembled molecule31,014,359130,919,77531,014,359180
Chromosome 20Assembled molecule33,110,875132,842,12033,110,875320
Chromosome 21Assembled molecule35,590,001135,111,25735,590,001360
Chromosome 22Assembled molecule29,294,280128,693,48129,294,280120
Chromosome 23Assembled molecule24,620,982124,559,62724,620,98280
Chromosome 24Assembled molecule35,997,201135,389,45835,997,201330
unplacedAssembled molecule104,587,79416398,794,5933,195,7861430