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Tcal_SD_v2.1

Organism name:
Tigriopus californicus (tidepool copepod)
Infraspecific name:
Strain: San Diego
BioSample:
SAMN02640207
BioProject:
PRJNA237968
Submitter:
Scripps Institution of Oceanography
Date:
2019/07/29
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_007210705.1 (latest)
RefSeq assembly accession:
GCF_007210705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VCGU01
Assembly method:
HiRise v. 2017-07
Expected final version:
no
Genome coverage:
180.0x
Sequencing technology:
Illumina; PacBio RSII

IDs: 4120771 [UID] 12698328 [GenBank] 46590758 [RefSeq]

See Genome Information for Tigriopus californicus

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length191,142,546
Total ungapped length187,158,573
Gaps between scaffolds0
Number of scaffolds459
Scaffold N5015,806,032
Scaffold L506
Number of contigs11,341
Contig N5044,438
Contig L501,244
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)459

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007210735.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM017373.1=NC_081440.10
Chromosome 2CM017374.1=NC_081441.10
Chromosome 3CM017375.1=NC_081442.10
Chromosome 4CM017376.1=NC_081443.10
Chromosome 5CM017377.1=NC_081444.10
Chromosome 6CM017378.1=NC_081445.10
Chromosome 7CM017379.1=NC_081446.10
Chromosome 8CM017380.1=NC_081447.10
Chromosome 9CM017381.1=NC_081448.10
Chromosome 10CM017382.1=NC_081449.10
Chromosome 11CM017383.1=NC_081450.10
Chromosome 12CM017384.1=NC_081451.10
unplacedn/an/an/a447

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All191,142,546459187,158,57315,806,03210,8820
Chromosome 116,497,411116,235,95616,497,4117040
Chromosome 215,265,986114,949,83415,265,9868360
Chromosome 314,796,774114,492,89714,796,7747410
Chromosome 413,375,517113,128,39413,375,5176920
Chromosome 516,473,687116,148,07416,473,6879750
Chromosome 615,273,878114,924,58315,273,8789620
Chromosome 716,452,659116,151,40216,452,6598180
Chromosome 815,676,443115,402,15415,676,4438940
Chromosome 915,806,032115,538,44915,806,0327770
Chromosome 1016,296,148116,034,73416,296,1487110
Chromosome 1115,796,145115,449,98015,796,1458930
Chromosome 1218,073,795117,424,57318,073,7951,2480
unplaced1,358,0714471,277,5437,7696310