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Source database (GenBank or RefSeq) File type

Asia_NLE_v1

Organism name:

Nomascus leucogenys (northern white-cheeked gibbon)

Isolate:

Asia

Sex:

female

BioSample:

SAMN11124083

BioProject:

PRJNA369439

Submitter:

University of Washington

Date:

2019/07/02

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_006542625.1 (latest)

RefSeq assembly accession:

GCF_006542625.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VIFL01

Assembly method:

FALCON v. (git hash: 91e700c4) Nov 2015

Expected final version:

Genome coverage:

79.7x

Sequencing technology:

PacBio; Illumina

IDs: 3590591 [UID] 11597548 [GenBank] 13631498 [RefSeq]

See Genome Information for Nomascus leucogenys

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_006542625.1	≠	GCF_006542625.1	Asia_NLE_v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,843,982,884
Total ungapped length	2,828,890,729
Gaps between scaffolds	125
Number of scaffolds	2,377
Scaffold N50	35,886,894
Scaffold L50	29
Number of contigs	2,761
Contig N50	12,782,853
Contig L50	72
Total number of chromosomes and plasmids	27
Number of component sequences (WGS or clone)	2,762

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1a	CM016945.1	=	NC_044381.1	0
Chromosome 2	CM016946.1	=	NC_044382.1	0
Chromosome 3	CM016947.1	=	NC_044383.1	0
Chromosome 4	CM016948.1	=	NC_044384.1	0
Chromosome 5	CM016949.1	=	NC_044385.1	0
Chromosome 6	CM016950.1	=	NC_044386.1	0
Chromosome 7b	CM016951.1	=	NC_044387.1	0
Chromosome 8	CM016952.1	=	NC_044388.1	0
Chromosome 9	CM016953.1	=	NC_044389.1	0
Chromosome 10	CM016954.1	=	NC_044390.1	0
Chromosome 11	CM016955.1	=	NC_044391.1	0
Chromosome 12	CM016956.1	=	NC_044392.1	0
Chromosome 13	CM016957.1	=	NC_044393.1	0
Chromosome 14	CM016958.1	=	NC_044394.1	0
Chromosome 15	CM016959.1	=	NC_044395.1	0
Chromosome 16	CM016960.1	=	NC_044396.1	0
Chromosome 17	CM016961.1	=	NC_044397.1	0
Chromosome 18	CM016962.1	=	NC_044398.1	0
Chromosome 19	CM016963.1	=	NC_044399.1	0
Chromosome 20	CM016964.1	=	NC_044400.1	0
Chromosome 21	CM016965.1	=	NC_044401.1	0
Chromosome 22a	CM016966.1	=	NC_044402.1	0
Chromosome 23	CM016967.1	=	NC_044403.1	0
Chromosome 24	CM016968.1	=	NC_044404.1	0
Chromosome 25	CM016969.1	=	NC_044405.1	0
Chromosome X	CM016970.1	=	NC_044406.1	0
unplaced	n/a	n/a	n/a	2,225

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,843,966,406	2,376	2,828,874,251	35,886,894	384	125
Chromosome 1a	107,395,155	3	106,776,317	33,046,042	19	2
Chromosome 2	156,228,797	7	156,169,283	63,882,515	11	6
Chromosome 3	156,076,922	6	155,786,664	84,525,267	14	5
Chromosome 4	150,142,476	10	149,826,770	23,458,327	16	9
Chromosome 5	140,329,754	8	139,790,338	46,671,210	17	7
Chromosome 6	120,667,183	6	119,754,736	41,938,638	24	5
Chromosome 7b	110,100,252	8	108,181,214	60,924,642	20	7
Chromosome 8	113,958,799	6	113,498,994	46,090,102	16	5
Chromosome 9	115,106,850	4	115,045,191	34,519,818	12	3
Chromosome 10	100,286,876	10	100,028,514	23,297,294	21	9
Chromosome 11	119,215,260	7	118,713,525	35,886,894	8	6
Chromosome 12	106,591,116	8	106,249,189	54,335,205	8	7
Chromosome 13	107,515,305	4	107,216,487	38,527,379	15	3
Chromosome 14	93,002,606	6	92,385,880	26,713,866	26	5
Chromosome 15	108,380,097	6	107,372,758	20,110,298	13	5
Chromosome 16	95,763,020	5	95,724,030	22,089,817	8	4
Chromosome 17	94,852,167	10	94,484,113	30,442,261	16	9
Chromosome 18	103,066,776	6	102,442,887	36,159,744	16	5
Chromosome 19	77,458,999	8	76,663,925	20,663,418	10	7
Chromosome 20	83,606,217	4	83,431,266	46,757,945	12	3
Chromosome 21	82,859,782	3	82,607,678	44,861,815	5	2
Chromosome 22a	142,313,534	5	141,697,515	98,869,372	21	4
Chromosome 23	34,473,784	4	34,129,338	20,566,083	8	3
Chromosome 24	29,689,981	1	29,555,459	29,689,981	7	0
Chromosome 25	31,549,279	1	31,548,248	31,549,279	3	0
Chromosome X	140,746,522	5	139,281,453	34,035,950	24	4
unplaced	122,588,897	2,225	120,512,479	92,153	14	0

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Asia_NLE_v1

See Genome Information for Nomascus leucogenys

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear