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Source database (GenBank or RefSeq) File type

ASM528154v1

Organism name:

Epinephelus lanceolatus (giant grouper)

Isolate:

Andai001

Sex:

female

BioSample:

SAMN10786578

BioProject:

PRJNA516312

Submitter:

Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences

Date:

2019/05/13

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_005281545.1 (latest)

RefSeq assembly accession:

GCF_005281545.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

SZWH01

Assembly method:

SOAPdenovo v. 2.0

Expected final version:

yes

Genome coverage:

133.0x

Sequencing technology:

Illumina HiSeq; BGISEQ-500

IDs: 2828621 [UID] 9899128 [GenBank] 18724878 [RefSeq]

See Genome Information for Epinephelus lanceolatus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005281545.1	≠	GCF_005281545.1	ASM528154v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Both paired-ended short reads produced by Illumina HiSeq platform and HiC reads produced by BGISEQ-500 platform were used to assemble and link the sequences in the assembly.

Global statistics

Total sequence length	1,087,415,941
Total ungapped length	1,048,167,319
Gaps between scaffolds	0
Number of scaffolds	4,201
Scaffold N50	46,227,939
Scaffold L50	11
Number of contigs	22,226
Contig N50	159,800
Contig L50	1,795
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	4,201

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM016520.1	=	NC_046991.1	0
Chromosome 2	CM016521.1	=	NC_046992.1	0
Chromosome 3	CM016522.1	=	NC_046993.1	0
Chromosome 4	CM016523.1	=	NC_046994.1	0
Chromosome 5	CM016524.1	=	NC_046995.1	0
Chromosome 6	CM016525.1	=	NC_046996.1	0
Chromosome 7	CM016526.1	=	NC_046997.1	0
Chromosome 8	CM016527.1	=	NC_046998.1	0
Chromosome 9	CM016528.1	=	NC_046999.1	0
Chromosome 10	CM016529.1	=	NC_047000.1	0
Chromosome 11	CM016530.1	=	NC_047001.1	0
Chromosome 12	CM016531.1	=	NC_047002.1	0
Chromosome 13	CM016532.1	=	NC_047003.1	0
Chromosome 14	CM016533.1	=	NC_047004.1	0
Chromosome 15	CM016534.1	=	NC_047005.1	0
Chromosome 16	CM016535.1	=	NC_047006.1	0
Chromosome 17	CM016536.1	=	NC_047007.1	0
Chromosome 18	CM016537.1	=	NC_047008.1	0
Chromosome 19	CM016538.1	=	NC_047009.1	0
Chromosome 20	CM016539.1	=	NC_047010.1	0
Chromosome 21	CM016540.1	=	NC_047011.1	0
Chromosome 22	CM016541.1	=	NC_047012.1	0
Chromosome 23	CM016542.1	=	NC_047013.1	0
Chromosome 24	CM016543.1	=	NC_047014.1	0
unplaced	n/a	n/a	n/a	4,176

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,087,399,367	4,200	1,048,150,745	46,227,939	18,025
Chromosome 1	57,740,692	1	55,935,080	57,740,692	847
Chromosome 2	52,846,369	1	50,993,354	52,846,369	866
Chromosome 3	52,174,673	1	49,879,676	52,174,673	1,052
Chromosome 4	49,726,094	1	47,940,748	49,726,094	820
Chromosome 5	48,868,446	1	47,315,785	48,868,446	755
Chromosome 6	48,775,047	1	47,556,361	48,775,047	623
Chromosome 7	48,758,432	1	47,566,822	48,758,432	606
Chromosome 8	48,704,810	1	47,108,938	48,704,810	779
Chromosome 9	48,494,139	1	46,717,222	48,494,139	833
Chromosome 10	46,513,705	1	44,714,059	46,513,705	824
Chromosome 11	46,227,939	1	44,784,009	46,227,939	674
Chromosome 12	45,250,767	1	43,520,609	45,250,767	783
Chromosome 13	44,881,230	1	42,764,238	44,881,230	869
Chromosome 14	43,379,860	1	42,366,731	43,379,860	517
Chromosome 15	43,207,221	1	41,850,914	43,207,221	700
Chromosome 16	42,612,996	1	41,143,912	42,612,996	717
Chromosome 17	42,493,523	1	40,704,367	42,493,523	818
Chromosome 18	41,934,532	1	40,827,791	41,934,532	566
Chromosome 19	40,864,725	1	39,645,758	40,864,725	599
Chromosome 20	40,427,337	1	38,147,416	40,427,337	992
Chromosome 21	40,383,474	1	39,044,326	40,383,474	634
Chromosome 22	38,497,468	1	37,154,373	38,497,468	589
Chromosome 23	35,479,383	1	34,423,185	35,479,383	514
Chromosome 24	21,756,198	1	20,745,475	21,756,198	462
unplaced	17,400,307	4,176	15,299,596	5,727	586

Assembly

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ASM528154v1

See Genome Information for Epinephelus lanceolatus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear