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athCun1

Organism name:
Athene cunicularia (burrowing owl)
Isolate:
RWA
Sex:
male
BioSample:
SAMN08961563
BioProject:
PRJNA431202
Submitter:
Stefan Boerno's shared submissions
Date:
2018/06/21
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003259725.1 (latest)
RefSeq assembly accession:
GCF_003259725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QEEU01
Assembly method:
IDBA v. 2014; Newbler v. 3; GapCloser v. 2014; SSPACE v. 2.0; LAST v. 2014; RAGOUT v. 2014
Expected final version:
yes
Genome coverage:
46.0x
Sequencing technology:
Illumina

IDs: 1769881 [UID] 6706208 [GenBank] 7608598 [RefSeq]

See Genome Information for Athene cunicularia

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,157,069,330
Total ungapped length1,144,426,484
Gaps between scaffolds0
Number of scaffolds445
Scaffold N5042,147,404
Scaffold L506
Number of contigs34,182
Contig N5064,091
Contig L505,331
Total number of chromosomes and plasmids28
Number of component sequences (WGS or clone)445

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003259815.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/an/a4
Chromosome 2n/an/an/a2
Chromosome 3n/an/an/a1
Chromosome 4n/an/an/a3
Chromosome 5n/an/an/a4
Chromosome 6n/an/an/a2
Chromosome 7n/an/an/a2
Chromosome 8n/an/an/a1
Chromosome 9n/an/an/a2
Chromosome 10n/an/an/a1
Chromosome 11n/an/an/a3
Chromosome 12n/an/an/a1
Chromosome 13n/an/an/a1
Chromosome 14n/an/an/a3
Chromosome 15n/an/an/a1
Chromosome 17n/an/an/a1
Chromosome 18n/an/an/a1
Chromosome 19n/an/an/a1
Chromosome 20n/an/an/a2
Chromosome 21n/an/an/a1
Chromosome 22n/an/an/a2
Chromosome 23n/an/an/a2
Chromosome 24n/an/an/a2
Chromosome 25n/an/an/a2
Chromosome 26n/an/an/a2
Chromosome 27n/an/an/a1
Chromosome 28n/an/an/a3
Chromosome Zn/an/an/a5
unplacedn/an/an/a389

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,157,069,3304451,144,426,48442,147,40433,7370
Chromosome 1AllAssembled moleculeUnlocalized scaffolds214,130,0620214,130,062404212,833,9650212,833,965130,168,2310130,168,2315,45005,450000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds164,239,5590164,239,559202163,258,6110163,258,611153,432,7140153,432,7143,98503,985000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds125,482,7430125,482,743101124,843,1080124,843,108125,482,7430125,482,7433,00603,006000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds103,073,1940103,073,194303102,631,2880102,631,28837,247,320037,247,3202,58402,584000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds69,734,152069,734,15240469,271,347069,271,34746,889,661046,889,6611,84401,844000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds38,250,184038,250,18420237,982,260037,982,26026,801,323026,801,3231,09401,094000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds42,804,904042,804,90420242,595,718042,595,71838,412,382038,412,3821,11001,110000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds35,640,499035,640,49910135,418,964035,418,96435,640,499035,640,4991,05701,057000
Chromosome 9AllAssembled moleculeUnlocalized scaffolds31,383,219031,383,21920231,061,163031,061,16327,102,458027,102,4588250825000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds23,372,683023,372,68310123,228,680023,228,68023,372,683023,372,6836690669000
Chromosome 11AllAssembled moleculeUnlocalized scaffolds23,617,813023,617,81330323,202,542023,202,54220,456,437020,456,4377120712000
Chromosome 12AllAssembled moleculeUnlocalized scaffolds24,132,915024,132,91510123,934,293023,934,29324,132,915024,132,9156590659000
Chromosome 13AllAssembled moleculeUnlocalized scaffolds21,494,962021,494,96210121,209,343021,209,34321,494,962021,494,9626560656000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds19,166,024019,166,02430318,916,762018,916,76217,588,321017,588,3216600660000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds16,156,921016,156,92110115,789,288015,789,28816,156,921016,156,9215950595000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds12,500,421012,500,42110112,310,216012,310,21612,500,421012,500,4215160516000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds13,607,177013,607,17710113,091,187013,091,18713,607,177013,607,1775400540000
Chromosome 19AllAssembled moleculeUnlocalized scaffolds12,563,656012,563,65610112,366,602012,366,60212,563,656012,563,6564700470000
Chromosome 20AllAssembled moleculeUnlocalized scaffolds15,521,486015,521,48620215,123,799015,123,79914,312,437014,312,4375320532000
Chromosome 21AllAssembled moleculeUnlocalized scaffolds9,144,53909,144,5391018,908,07808,908,0789,144,53909,144,5394060406000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds5,137,25705,137,2572024,974,99704,974,9975,016,09005,016,0902820282000
Chromosome 23AllAssembled moleculeUnlocalized scaffolds7,950,95407,950,9542027,604,46907,604,4696,547,31706,547,3174720472000
Chromosome 24AllAssembled moleculeUnlocalized scaffolds7,872,32307,872,3232027,600,79207,600,7926,968,45006,968,4504350435000
Chromosome 25AllAssembled moleculeUnlocalized scaffolds1,972,84201,972,8422021,505,37001,505,3701,808,12301,808,1231760176000
Chromosome 26AllAssembled moleculeUnlocalized scaffolds7,098,26907,098,2692026,829,98206,829,9823,624,36103,624,3614130413000
Chromosome 27AllAssembled moleculeUnlocalized scaffolds5,664,97205,664,9721014,823,66004,823,6605,664,97205,664,9723540354000
Chromosome 28AllAssembled moleculeUnlocalized scaffolds5,322,11605,322,1163034,820,03504,820,0352,877,33002,877,3303290329000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds84,045,518084,045,51850583,324,109083,324,10924,217,573024,217,5732,65902,659000
unplacedAssembled molecule15,987,96638914,965,856135,8031,2470