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PHallii_v3.1

Organism name:: Panicum hallii (monocots)
Infraspecific name:: Strain: FIL2
BioSample:: SAMN03003198
BioProject:: PRJNA250527
Submitter:: DOE Joint Genome Institute
Date:: 2018/05/01
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_002211085.2 (latest)
RefSeq assembly accession:: GCF_002211085.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: NCQW02
Assembly method:: MECAT v. 33
Genome coverage:: 202x
Sequencing technology:: PACBIO SEQUEL; Illumina HISeq; MOLECULO

IDs: 1690371 [UID] 6431678 [GenBank] 6925088 [RefSeq]

See Genome Information for Panicum hallii

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Total sequence length	535,889,049
Total ungapped length	528,529,049
Gaps between scaffolds	736
Number of scaffolds	1,027
Scaffold N50	1,111,465
Scaffold L50	117
Number of contigs	1,027
Contig N50	1,111,465
Contig L50	117
Total number of chromosomes and plasmids	9
Number of component sequences (WGS or clone)	1,027

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Assembly Information

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PHallii_v3.1 - Genome - Assembly - NCBI
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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

Assembly Unit: Primary Assembly (GCF_002211095.1)

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM008046.2	=	NC_038042.1	0
Chromosome 2	CM008047.2	=	NC_038043.1	0
Chromosome 3	CM008048.2	=	NC_038044.1	0
Chromosome 4	CM008049.2	=	NC_038045.1	0
Chromosome 5	CM008050.2	=	NC_038046.1	0
Chromosome 6	CM008051.2	=	NC_038047.1	0
Chromosome 7	CM008052.2	=	NC_038048.1	0
Chromosome 8	CM008053.2	=	NC_038049.1	0
Chromosome 9	CM008054.2	=	NC_038050.1	0
unplaced	n/a	n/a	n/a	282

Assembly statistics

Primary Assembly

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	535,889,049	1,027	528,529,049	1,111,465	0	736
Chromosome 1	59,908,720	90	59,018,720	1,157,335	0	89
Chromosome 2	57,869,027	73	57,149,027	1,624,789	0	72
Chromosome 3	64,542,667	97	63,582,667	1,810,537	0	96
Chromosome 4	52,913,018	103	51,893,018	677,479	0	102
Chromosome 5	59,521,222	72	58,811,222	1,862,923	0	71
Chromosome 6	45,727,423	90	44,837,423	705,151	0	89
Chromosome 7	48,048,951	58	47,478,951	1,444,301	0	57
Chromosome 8	44,948,983	78	44,178,983	908,640	0	77
Chromosome 9	73,933,493	84	73,103,493	1,448,913	0	83
unplaced	28,475,545	282	28,475,545	130,793	0	0