U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM216827v2

Organism name:
Herrania umbratica (eudicots)
Infraspecific name:
Cultivar: Fairchild
BioSample:
SAMN06806157
BioProject:
PRJNA383741
Submitter:
Mars, Incorporated
Date:
2017/06/05
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002168275.2 (latest)
RefSeq assembly accession:
GCF_002168275.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 58 unlocalized scaffolds on chromosomes MT and Pltd
  • Data displayed for RefSeq version
WGS Project:
NHTG01
Assembly method:
Meraculous v. OCT-2016; HiRise v. OCT-2016; PBjelly v. DEC-2016; Geneious v. MAR-2017; PILON v. MAY-2017
Expected final version:
no
Genome coverage:
223.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 1125711 [UID] 4569328 [GenBank] 4569388 [RefSeq]

See Genome Information for Herrania umbratica

History (Show revision history)

Comment

Global statistics

Total sequence length234,039,246
Total ungapped length221,051,304
Gaps between scaffolds0
Number of scaffolds6,074
Scaffold N508,132,550
Scaffold L5011
Number of contigs125,128
Contig N5046,150
Contig L501,240
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6,074

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced234,039,2466,074221,051,3048,132,550119,0540