Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download
IDs: 1116181 [UID] 4541828 [GenBank] 4550868 [RefSeq]
The AllPaths contigs were aligned on the Gallus_gallus-5.0 assembly (GCF_000002315.4) to obtain an assembly at the chromosome level, taking into account the rare known inter-chromosomal rearrangements detected by cytogenetic mapping. Comparison of cytogenetic and genetic maps from several gallo-anseriformes ... showed very limited number of inter-chromosomal rearrangements, all distinguishable by cytogenetics methods. No inter-chromosomal rearrangements between ducks and galliforme chromosomes were detected to date. Therefore, a chromosome assignment of Numida scaffolds based on Gallus_gallus-5.0 is correct. However, many intra-chromosomal rearrangements will be missed in regions composed of small scaffolds. Linkage of gaps in the assembly can therefore be informed by paired-end or mate-pair information in which case the number of Ns corresponds to the estimated size of the gap, or by alignment to Gallus_gallus-5.0 in which case we inserted 100 Ns. However, there are a few cases in which the paired-ends (or mate-pairs) gaps have 100 Ns. Following the alignment of the Numida scaffolds on the Gallus_gallus-5.0 genome, a few scaffolds had to be split and are thus named scaffoldXXA and scaffoldXXB. The mitochondrial chromosome is in GenBank accession number KY865420. more
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on