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Source database (GenBank or RefSeq) File type

Coco_2.0

Organism name:

Ictalurus punctatus (channel catfish)

Infraspecific name:

Breed: USDA103

Sex:

female

BioSample:

SAMN03486842

BioProject:

PRJNA281269

Submitter:

Auburn University

Date:

2022/10/20

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_001660625.3 (latest)

RefSeq assembly accession:

GCF_001660625.3 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

LBML02

Assembly method:

Canu v. 1.8

Expected final version:

yes

Genome coverage:

37.0x

Sequencing technology:

PacBio CLR; Illumina

IDs: 14171201 [UID] 36810928 [GenBank] 40682958 [RefSeq]

See Genome Information for Ictalurus punctatus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001660625.3	≠	GCF_001660625.3	Coco_2.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_001660625.2	≠	GCF_001660625.2	IpCoco_1.2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_001660625.1	≠	GCF_001660625.1	IpCoco_1.2	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	842,942,949
Total ungapped length	837,432,821
Gaps between scaffolds	0
Number of scaffolds	137
Scaffold N50	29,208,522
Scaffold L50	13
Number of contigs	237
Contig N50	20,961,409
Contig L50	16
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	137

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM004414.2	=	NC_030416.2	0
Chromosome 2	CM004415.2	=	NC_030417.2	0
Chromosome 3	CM004416.2	=	NC_030418.2	0
Chromosome 4	CM047298.1	=	NC_071284.1	0
Chromosome 5	CM004418.2	=	NC_030420.2	0
Chromosome 6	CM004419.2	=	NC_030421.2	0
Chromosome 7	CM004420.2	=	NC_030422.2	0
Chromosome 8	CM004421.2	=	NC_030423.2	0
Chromosome 9	CM004422.2	=	NC_030424.2	0
Chromosome 10	CM004423.2	=	NC_030425.2	0
Chromosome 11	CM004424.2	=	NC_030426.2	0
Chromosome 12	CM004425.2	=	NC_030427.2	0
Chromosome 13	CM004426.2	=	NC_030428.2	0
Chromosome 14	CM004427.2	=	NC_030429.2	0
Chromosome 15	CM004428.2	=	NC_030430.2	0
Chromosome 16	CM004429.2	=	NC_030431.2	0
Chromosome 17	CM004430.2	=	NC_030432.2	0
Chromosome 18	CM004431.2	=	NC_030433.2	0
Chromosome 19	CM004432.2	=	NC_030434.2	0
Chromosome 20	CM004433.2	=	NC_030435.2	0
Chromosome 21	CM004434.2	=	NC_030436.2	0
Chromosome 22	CM004435.2	=	NC_030437.2	0
Chromosome 23	CM004436.2	=	NC_030438.2	0
Chromosome 24	CM004437.2	=	NC_030439.2	0
Chromosome 25	CM004438.2	=	NC_030440.2	0
Chromosome 26	CM004439.2	=	NC_030441.2	0
Chromosome 27	CM004440.2	=	NC_030442.2	0
Chromosome 28	CM004441.2	=	NC_030443.2	0
Chromosome 29	CM004442.2	=	NC_030444.2	0
unplaced	n/a	n/a	n/a	107

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	842,926,452	136	837,416,324	29,208,522	100
Chromosome 1	39,107,963	1	39,099,302	39,107,963	2
Chromosome 2	40,225,253	1	40,074,453	40,225,253	5
Chromosome 3	37,689,791	1	37,559,782	37,689,791	3
Chromosome 4	36,068,007	1	35,979,960	36,068,007	5
Chromosome 5	35,307,646	1	34,930,524	35,307,646	7
Chromosome 6	33,913,446	1	33,905,815	33,913,446	2
Chromosome 7	35,057,770	1	35,057,570	35,057,770	2
Chromosome 8	31,480,639	1	31,470,489	31,480,639	2
Chromosome 9	32,429,570	1	32,371,869	32,429,570	2
Chromosome 10	30,657,734	1	30,657,734	30,657,734	0
Chromosome 11	28,357,196	1	28,357,096	28,357,196	1
Chromosome 12	33,762,910	1	33,592,371	33,762,910	2
Chromosome 13	29,879,606	1	29,879,606	29,879,606	0
Chromosome 14	29,208,522	1	29,193,242	29,208,522	2
Chromosome 15	27,035,493	1	27,028,584	27,035,493	1
Chromosome 16	27,127,331	1	27,127,231	27,127,331	1
Chromosome 17	26,294,090	1	26,169,112	26,294,090	3
Chromosome 18	25,178,057	1	25,177,957	25,178,057	1
Chromosome 19	28,067,236	1	27,004,636	28,067,236	5
Chromosome 20	24,995,078	1	24,971,628	24,995,078	1
Chromosome 21	21,541,656	1	21,411,316	21,541,656	2
Chromosome 22	20,758,072	1	20,757,872	20,758,072	2
Chromosome 23	20,789,747	1	20,789,547	20,789,747	2
Chromosome 24	22,224,706	1	22,028,924	22,224,706	1
Chromosome 25	20,218,528	1	20,218,428	20,218,528	1
Chromosome 26	20,701,421	1	20,674,269	20,701,421	2
Chromosome 27	19,431,687	1	19,431,687	19,431,687	0
Chromosome 28	20,119,889	1	19,812,005	20,119,889	5
Chromosome 29	16,467,644	1	16,242,023	16,467,644	5
unplaced	28,829,764	107	26,441,292	2,371,668	33

Assembly

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Coco_2.0

See Genome Information for Ictalurus punctatus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear