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ASM165402v1

Organism name:
Drosophila arizonae (flies)
Isolate:
ariz_Son04
BioSample:
SAMN04440796
BioProject:
PRJNA309836
Submitter:
Biotechnology Institute of UNAM
Date:
2016/05/09
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001654025.1 (latest)
RefSeq assembly accession:
GCF_001654025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LSRM01
Assembly method:
AllPaths v. R48777
Expected final version:
no
Genome coverage:
52.0x
Sequencing technology:
Illumina HiSeq

IDs: 751361 [UID] 3282238 [GenBank] 3415508 [RefSeq]

See Genome Information for Drosophila arizonae

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length141,386,800
Total ungapped length134,601,569
Gaps between scaffolds0
Number of scaffolds3,178
Scaffold N5026,536,676
Scaffold L503
Number of contigs17,526
Contig N5015,132
Contig L502,212
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)3,178

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001654035.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2n/an/an/a1
Chromosome 3n/an/an/a1
Chromosome 4n/an/an/a1
Chromosome 5n/an/an/a1
Chromosome 6n/an/an/a1
Chromosome Xn/an/an/a1
unplacedn/an/an/a3,172

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule141,386,8003,178134,601,56926,536,67614,3480
Chromosome 2AllAssembled moleculeUnlocalized scaffolds29,979,347029,979,34710129,085,853029,085,85329,979,347029,979,3472,35902,359000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds27,840,087027,840,08710126,028,574026,028,57427,840,087027,840,0873,65503,655000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds22,052,390022,052,39010121,446,347021,446,34722,052,390022,052,3901,63501,635000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds23,952,536023,952,53610122,890,496022,890,49623,952,536023,952,5362,48802,488000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds2,233,96802,233,9681012,110,27202,110,2722,233,96802,233,9683390339000
Chromosome XAllAssembled moleculeUnlocalized scaffolds26,536,676026,536,67610124,700,431024,700,43126,536,676026,536,6763,27003,270000
unplacedAssembled molecule8,791,7963,1728,339,5964,0376020