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Source database (GenBank or RefSeq) File type

ASM80110v3

Organism name:

Raphanus sativus (radish)

Infraspecific name:

Cultivar: WK10039

BioSample:

SAMN03084390

BioProject:

PRJNA239785

Submitter:

Myongji University

Date:

2023/02/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000801105.3 (latest)

RefSeq assembly accession:

GCF_000801105.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

JRUI03

Assembly method:

CANU v. 1.6

Expected final version:

yes

Genome coverage:

323.5x

Sequencing technology:

PacBio RSII; Illumina Moleculo; Illumina NovaSeq; Illumina HiSeq

IDs: 15856251 [UID] 40700738 [GenBank] 42963298 [RefSeq]

See Genome Information for Raphanus sativus

Pathogen Detection Resources

There are 16 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000801105.3	≠	GCF_000801105.2	ASM80110v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_000801105.2	≠	GCF_000801105.1	Rs1.0	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000801105.1	n/a	n/a	ASM80110v1	Scaffold	GenBank suppressed

Comment

Global statistics

Total sequence length	433,842,377
Total ungapped length	433,572,667
Gaps between scaffolds	0
Number of scaffolds	6,424
Scaffold N50	37,282,294
Scaffold L50	5
Number of contigs	9,122
Contig N50	184,364
Contig L50	459
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	6,424

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM052939.1	=	NC_079511.1	0
Chromosome 2	CM052940.1	=	NC_079512.1	0
Chromosome 3	CM052941.1	=	NC_079513.1	0
Chromosome 4	CM052942.1	=	NC_079514.1	0
Chromosome 5	CM052943.1	=	NC_079515.1	0
Chromosome 6	CM052944.1	=	NC_079516.1	0
Chromosome 7	CM052945.1	=	NC_079517.1	0
Chromosome 8	CM052946.1	=	NC_079518.1	0
Chromosome 9	CM052947.1	=	NC_079519.1	0
unplaced	n/a	n/a	n/a	6,413

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	AB694744.1	=	NC_018551.1
Chloroplast Pltd	KJ716483.1	=	NC_024469.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	433,430,583	6,422	433,160,873	37,282,294	2,698
Chromosome 1	26,279,342	1	26,261,142	26,279,342	182
Chromosome 2	40,702,021	1	40,676,821	40,702,021	252
Chromosome 3	28,415,227	1	28,374,027	28,415,227	412
Chromosome 4	52,202,202	1	52,158,002	52,202,202	442
Chromosome 5	39,956,999	1	39,929,999	39,956,999	270
Chromosome 6	53,709,999	1	53,673,299	53,709,999	367
Chromosome 7	25,868,459	1	25,853,459	25,868,459	150
Chromosome 8	27,228,771	1	27,205,271	27,228,771	235
Chromosome 9	37,282,294	1	37,251,994	37,282,294	303
unplaced	101,785,269	6,413	101,776,859	23,058	85

Molecule	Total Length
All	411,794
Mitochondrion MT	258,426
Chloroplast Pltd	153,368

Assembly

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ASM80110v3

See Genome Information for Raphanus sativus

Pathogen Detection Resources

There are 16 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear